myRT

myRT report for GCA_001721025.1_ASM172102v1

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Seq: CP012458.1 Enterococcus faecium strain ISMMS_VRE_5 plasmid ISMMS_VRE5_p2, complete sequence (40720 bp)
Overview 1 RT 1: 218-5429 bp Neighborhood of RT #1 [218, 5458] RVT-AbiP2 Transposase_mut Rve Feature: gene Location: 218-1606 bp Ori: AOM29842.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 479-944 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 479-944 bp Feature: gene Location: 1749-2927 bp Ori: AOM29801.1 Feature: domain Description: Transposase_mut Location: 1770-2862 bp Feature: domain Description: Transposase_mut Location: 1 770-2862 bp Feature: gene Location: 4778-5458 bp Ori: AOM29802.1 Feature: domain Description: Rve Location: 4781-5429 bp Feature: domain Description: Rve Location: 4781 -5429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Transposase_mut (pfam00872), Rve (COG3316)

Seq: CP012454.1 Enterococcus faecium strain ISMMS_VRE_5, complete genome (2818673 bp)
Overview 1 RT 1: 670-9192 bp 2 RT 2: 355972-360573 bp 3 RT 3: 417350-422532 bp 4 RT 4: 426042-437988 bp 5 RT 5: 2696250-2703081 bp 6 RT 6: 2809640-2814874 bp Neighborhood of RT #1 [670, 9260] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc DUF961 Neighborhood of RT #2 [355972, 360581] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #3 [417350, 423359] Lysozyme_like Spr RVT-GII Neighborhood of RT #4 [426042, 437996] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc RelB_DinJ Neighborhood of RT #5 [2696250, 2703089] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #6 [2809640, 2815701] Lysozyme_like Spr RVT-GII Feature: gene Location: 670-2580 bp Ori: AOM26918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1003-1741 bp Feature: domain Description: HNHc Note: nucleases Location: 2296-2461 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 96-2 461 bp Feature: gene Location: 3364-4569 bp Ori: AOM26919.1 Feature: domain Description: HTH_XRE Location: 3409-3553 bp Feature: domain Description: HTH_XRE Location: 3409-3553 bp Feature: domain Description: Rol_Rep_N Location: 3580-3847 bp Feature: domain Description: Rol_Rep_N Location: 3580-3847 bp Feature: domain Description: Rep_trans Location: 3871-4480 bp Feature: domain Description: Rep_trans Location: 3871-4480 bp Feature: gene Location: 4748-5032 bp Feature: gene Location: 5126-6985 bp Ori: AOM26921.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5435-6176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5435-6176 bp Feature: domain Description: HNHc Note: nucleases Location: 6731-6869 bp Feature: domain Description: HNHc Note: nucleases Location: 6731-6869 bp Feature: gene Location: 7104-7334 bp Feature: gene Location: 8874-9260 bp Ori: AOM26923.1 Feature: domain Description: DUF961 Location: 8892-9192 bp Feature: domain Description: DUF961 Location: 8892 -9192 bp Feature: gene Location: 355972-356217 bp Ori: AOM27236.1 Feature: domain Description: HTH_XRE Location: 356023-356209 bp Feature: domain Description: HTH_XRE Location: 35602 3-3562 09 bp Feature: gene Location: 356593-357072 bp Ori: AOM27237.1 Feature: domain Description: DUF3841 Location: 356602-356977 bp Feature: domain Description: DUF3841 Location: 356602 -356977 bp Feature: gene Location: 357250-358746 bp Ori: AOM29443.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 357658-358114 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 357658-358114 bp Feature: gene Location: 358892-359206 bp Ori: AOM27238.1 Feature: domain Description: AlbA_2 Location: 358931-359102 bp Feature: domain Description: AlbA_2 Location: 358931-359102 bp Feature: gene Location: 359322-360581 bp Ori: AOM27239.1 Feature: domain Description: PRK09290 Location: 359328-360573 bp Feature: domain Description: PRK092 90 Location: 35932 8-360573 bp Feature: gene Location: 417350-418354 bp Ori: AOM27289.1 Feature: domain Description: Lysozyme_like Location: 417497-417959 bp Feature: domain Description: Lysozyme_like Location: 417497-417959 bp Feature: domain Description: Spr Location: 417986-418340 bp Feature: domain Description: Spr Location: 417986-418340 bp Feature: gene Location: 418351-420474 bp Feature: gene Location: 421533-423359 bp Ori: AOM27291.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421833-422532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 1833-42 2 532 bp Feature: gene Location: 426042-426545 bp Ori: AOM27293.1 Feature: domain Description: ArdA Location: 426060-426531 bp Feature: domain Description: ArdA Location: 42 6060-42 6531 bp Feature: gene Location: 426558-426782 bp Feature: gene Location: 426886-428796 bp Ori: AOM27295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427219-427957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 72 19-42 7957 bp Feature: domain Description: HNHc Note: nucleases Location: 428512-428677 bp Feature: domain Description: HNHc Note: nucleases Location: 42 8512 -42 8677 bp Feature: gene Location: 429542-429661 bp Ori: AOM27296.1 Feature: domain Description: DUF3789 Location: 429551-429644 bp Feature: domain Description: DUF3789 Location: 42 9551-42 9644 bp Feature: gene Location: 429676-430860 bp Ori: AOM27297.1 Feature: domain Description: HTH_XRE Location: 429706-429850 bp Feature: domain Description: HTH_XRE Location: 42 9706-42 9850 bp Feature: domain Description: Rol_Rep_N Location: 429883-430147 bp Feature: domain Description: Rol_Rep_N Location: 42 9883-430147 bp Feature: domain Description: Rep_trans Location: 430171-430783 bp Feature: domain Description: Rep_trans Location: 430171-430783 bp Feature: gene Location: 432774-433448 bp Ori: AOM27301.1 Feature: domain Description: Zeta_toxin Location: 432873-433356 bp Feature: domain Description: Zeta_toxin Location: 432 873-433356 bp Feature: gene Location: 433526-433765 bp Feature: gene Location: 433859-435718 bp Ori: AOM27303.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434168-434909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434168-434909 bp Feature: domain Description: HNHc Note: nucleases Location: 435464-435602 bp Feature: domain Description: HNHc Note: nucleases Location: 435464-435602 bp Feature: gene Location: 435837-436067 bp Feature: gene Location: 437661-437996 bp Ori: AOM27305.1 Feature: domain Description: RelB_DinJ Location: 437865-437988 bp Feature: domain Description: RelB_DinJ Location: 437865-437988 bp Feature: gene Location: 2696250-2697506 bp Ori: AOM29340.1 Feature: domain Description: PRK13354 Location: 2696253-2697498 bp Feature: domain Description: PRK13354 Location: 2 6962 53-2 697498 bp Feature: gene Location: 2698086-2699387 bp Ori: AOM29341.1 Feature: domain Description: CE4_DAC_u3_5s Location: 2698755-2699145 bp Feature: domain Description: CE4_DAC_u3_5s Location: 2 698755-2 699145 bp Feature: gene Location: 2699480-2700868 bp Ori: AOM29342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699801-2700416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 699801-2 700416 bp Feature: domain Description: GIIM Note: maturase Location: 2700473-2700689 bp Feature: domain Description: GIIM Note: maturase Location: 2 700473-2 700689 bp Feature: gene Location: 2701355-2701954 bp Ori: AOM29343.1 Feature: domain Description: AcrR Location: 2701373-2701859 bp Feature: domain Description: AcrR Location: 2 701373-2 701859 bp Feature: gene Location: 2702208-2703089 bp Ori: AOM29344.1 Feature: domain Description: CcmA Location: 2702211-2703081 bp Feature: domain Description: CcmA Location: 2 702 2 11-2 703081 bp Feature: gene Location: 2809640-2810641 bp Ori: AOM29430.1 Feature: domain Description: Lysozyme_like Location: 2809784-2810243 bp Feature: domain Description: Lysozyme_like Location: 2 809784-2 8102 43 bp Feature: domain Description: Spr Location: 2810270-2810624 bp Feature: domain Description: Spr Location: 2 8102 70-2 81062 4 bp Feature: gene Location: 2810638-2812821 bp Feature: gene Location: 2813875-2815701 bp Ori: AOM29432.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2814175-2814874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 814175-2 814874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF961 (pfam06125), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)
Lysozyme_like (pfam13702), Spr (COG0791), ArdA (pfam07275), DUF3789 (pfam12664), Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384), PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), GIIM (pfam08388), AcrR (COG1309)
CcmA (COG4133)