myRT

myRT report for GCA_001721085.1_ASM172108v1

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Seq: CP012465.1 Enterococcus faecium strain ISMMS_VRE_8, complete genome (2970757 bp)
Overview 1 RT 1: 1324420-1330319 bp 2 RT 2: 2239920-2243286 bp Neighborhood of RT #1 [1324420, 1330375] dcm FtsK RVT-GII HNHc RelB_DinJ DUF961 Neighborhood of RT #2 [2239920, 2243286] RVT-GII GIIM Feature: gene Location: 1324420-1325415 bp Ori: AOM34085.1 Feature: domain Description: dcm Location: 1324426-1325389 bp Feature: domain Description: dcm Location: 1 324426-1 325389 bp Feature: gene Location: 1325612-1325992 bp Ori: AOM34086.1 Feature: domain Description: FtsK Location: 1325627-1325864 bp Feature: domain Description: FtsK Location: 1 325627-1 325864 bp Feature: gene Location: 1326094-1327896 bp Ori: AOM35630.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1326388-1327084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 326388-1 327084 bp Feature: domain Description: HNHc Note: nucleases Location: 1327624-1327783 bp Feature: domain Description: HNHc Note: nucleases Location: 1 327624-1 327783 bp Feature: gene Location: 1329647-1329991 bp Ori: AOM34087.1 Feature: domain Description: RelB_DinJ Location: 1329857-1329983 bp Feature: domain Description: RelB_DinJ Location: 1 329857-1 329983 bp Feature: gene Location: 1330001-1330375 bp Ori: AOM34088.1 Feature: domain Description: DUF961 Location: 1330019-1330319 bp Feature: domain Description: DUF961 Location: 1 33001 9-1 33031 9 bp Feature: gene Location: 2239920-2240285 bp Feature: gene Location: 2240287-2240739 bp Feature: gene Location: 2241307-2242581 bp Ori: AOM34913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241508-2242123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241 508-22421 23 bp Feature: domain Description: GIIM Note: maturase Location: 2242183-2242393 bp Feature: domain Description: GIIM Note: maturase Location: 22421 83-2242393 bp Feature: gene Location: 2242684-2242911 bp Feature: gene Location: 2242915-2243286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcm (TIGR00675), FtsK (COG1674), RVT-GII, HNHc (smart00507), RelB_DinJ (TIGR02384), DUF961 (pfam06125), GIIM (pfam08388)

Seq: CP012466.1 Enterococcus faecium strain ISMMS_VRE_8 plasmid ISMMS_VRE8_p3 sequence (105869 bp)
Overview 1 RT 1: 28726-35571 bp 2 RT 2: 95345-102047 bp Neighborhood of RT #1 [28726, 35771] PinE Tra8 RVT-AbiP2 Rve HicB Neighborhood of RT #2 [95345, 102047] RVT-GII Feature: gene Location: 28726-29289 bp Ori: AOM35707.1 Feature: domain Description: PinE Location: 28738-29284 bp Feature: domain Description: PinE Location: 2 8738-2 92 84 bp Feature: gene Location: 29932-30885 bp Ori: AOM35708.1 Feature: domain Description: Tra8 Location: 29935-30862 bp Feature: domain Description: Tra8 Location: 2 9935-30862 bp Feature: gene Location: 30950-32338 bp Ori: AOM35782.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31211-31676 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 312 11-31676 bp Feature: gene Location: 34115-34795 bp Ori: AOM35709.1 Feature: domain Description: Rve Location: 34118-34766 bp Feature: domain Description: Rve Location: 34118-34766 bp Feature: gene Location: 35373-35771 bp Ori: AOM35710.1 Feature: domain Description: HicB Location: 35394-35571 bp Feature: domain Description: HicB Location: 35394-35571 bp Feature: gene Location: 95345-96463 bp Feature: gene Location: 96496-96783 bp Feature: gene Location: 98290-100152 bp Ori: AOM35773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98599-99337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98599-99337 bp Feature: gene Location: 101521-101868 bp Feature: gene Location: 101865-102047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Rve (COG3316), HicB (pfam05534), RVT-GII

Seq: CP012468.1 Enterococcus faecium strain ISMMS_VRE_8 plasmid ISMMS_VRE8_p2, complete sequence (84196 bp)
Overview 1 RT 1: 29446-36027 bp Neighborhood of RT #1 [29446, 36027] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 29446-30645 bp Ori: AOM36020.1 Feature: domain Description: Glucosaminidase Location: 29716-30112 bp Feature: domain Description: Glucosaminidase Location: 29716-3 0112 bp Feature: domain Description: Peptidase_M23 Location: 30289-30526 bp Feature: domain Description: Peptidase_M23 Location: 3 0289-3 0526 bp Feature: gene Location: 30645-30965 bp Feature: gene Location: 31153-33030 bp Ori: AOM36022.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31468-32206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1468-3 2206 bp Feature: domain Description: HNHc Note: nucleases Location: 32764-32917 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2764-3 2917 bp Feature: gene Location: 33718-35412 bp Ori: AOM36023.1 Feature: domain Description: VirB4 Location: 34036-34720 bp Feature: domain Description: VirB4 Location: 3 403 6-3 4720 bp Feature: gene Location: 35434-36027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)