myRT

myRT report for GCA_001721105.1_ASM172110v1

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Seq: CP012474.1 Enterococcus faecium strain ISMMS_VRE_10 plasmid ISMMS_VRE10_p3 sequence (40433 bp)
Overview 1 RT 1: 15228-29698 bp Neighborhood of RT #1 [15228, 29703] PolY_Pol_V_umuC RVT-GII PinE COG3464 Rve RVT-AbiP2 Tra8 PinE Feature: gene Location: 15228-15578 bp Feature: gene Location: 15571-16866 bp Ori: AOM39120.1 Feature: domain Description: PolY_Pol_V_umuC Location: 15610-16645 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 561 0-1 6645 bp Feature: gene Location: 16948-18810 bp Ori: AOM39121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17257-17995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7257-1 7995 bp Feature: gene Location: 19752-20336 bp Ori: AOM39122.1 Feature: domain Description: PinE Location: 19758-20319 bp Feature: domain Description: PinE Location: 1 9758-2031 9 bp Feature: gene Location: 20546-20749 bp Feature: gene Location: 22259-23518 bp Ori: AOM39126.1 Feature: domain Description: COG3464 Location: 22394-23495 bp Feature: domain Description: COG3464 Location: 22394-23495 bp Feature: gene Location: 23572-24252 bp Ori: AOM39127.1 Feature: domain Description: Rve Location: 23575-24223 bp Feature: domain Description: Rve Location: 23575-24223 bp Feature: gene Location: 26091-27479 bp Ori: AOM39141.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26352-26817 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26352-2681 7 bp Feature: gene Location: 27544-28497 bp Ori: AOM39128.1 Feature: domain Description: Tra8 Location: 27547-28474 bp Feature: domain Description: Tra8 Location: 27547-28474 bp Feature: gene Location: 29140-29703 bp Ori: AOM39129.1 Feature: domain Description: PinE Location: 29152-29698 bp Feature: domain Description: PinE Location: 291 52-29698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, PinE (COG1961), COG3464 (Transposase ), Rve (COG3316), RVT-AbiP2, Tra8 (COG2826)

Seq: CP012471.1 Enterococcus faecium strain ISMMS_VRE_10 genome (2869419 bp)
Overview 1 RT 1: 1833423-1840254 bp 2 RT 2: 1984870-1990104 bp 3 RT 3: 1993614-2002980 bp 4 RT 4: 2348254-2352855 bp 5 RT 5: 2409632-2414814 bp 6 RT 6: 2417875-2430398 bp Neighborhood of RT #1 [1833423, 1840262] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #2 [1984870, 1990931] Lysozyme_like Spr RVT-GII Neighborhood of RT #3 [1993614, 2003048] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc DUF961 Neighborhood of RT #4 [2348254, 2352863] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #5 [2409632, 2415641] Lysozyme_like Spr RVT-GII Neighborhood of RT #6 [2417875, 2430406] TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc RelB_DinJ Feature: gene Location: 1833423-1834679 bp Ori: AOM37834.1 Feature: domain Description: PRK13354 Location: 1833426-1834671 bp Feature: domain Description: PRK13354 Location: 183342 6-1834671 bp Feature: gene Location: 1835259-1836560 bp Ori: AOM37835.1 Feature: domain Description: CE4_DAC_u3_5s Location: 1835928-1836318 bp Feature: domain Description: CE4_DAC_u3_5s Location: 183592 8-1836318 bp Feature: gene Location: 1836653-1838041 bp Ori: AOM37836.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836974-1837589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836974-1837589 bp Feature: domain Description: GIIM Note: maturase Location: 1837646-1837862 bp Feature: domain Description: GIIM Note: maturase Location: 1837646-1837862 bp Feature: gene Location: 1838528-1839127 bp Ori: AOM37837.1 Feature: domain Description: AcrR Location: 1838546-1839032 bp Feature: domain Description: AcrR Location: 1838546-1839032 bp Feature: gene Location: 1839381-1840262 bp Ori: AOM37838.1 Feature: domain Description: CcmA Location: 1839384-1840254 bp Feature: domain Description: CcmA Location: 1839384-18402 54 bp Feature: gene Location: 1984870-1985871 bp Ori: AOM37962.1 Feature: domain Description: Lysozyme_like Location: 1985014-1985473 bp Feature: domain Description: Lysozyme_like Location: 1985014-1985473 bp Feature: domain Description: Spr Location: 1985500-1985854 bp Feature: domain Description: Spr Location: 1985500-1985854 bp Feature: gene Location: 1985868-1988051 bp Feature: gene Location: 1989105-1990931 bp Ori: AOM37964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989405-1990104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989405-1990104 bp Feature: gene Location: 1993614-1994117 bp Ori: AOM37966.1 Feature: domain Description: ArdA Location: 1993632-1994103 bp Feature: domain Description: ArdA Location: 1993632 -1994103 bp Feature: gene Location: 1994130-1994354 bp Feature: gene Location: 1994458-1996368 bp Ori: AOM37968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994791-1995529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994791-199552 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1996084-1996249 bp Feature: domain Description: HNHc Note: nucleases Location: 1996084-19962 49 bp Feature: gene Location: 1997152-1998357 bp Ori: AOM37969.1 Feature: domain Description: HTH_XRE Location: 1997197-1997341 bp Feature: domain Description: HTH_XRE Location: 1997197-1997341 bp Feature: domain Description: Rol_Rep_N Location: 1997368-1997635 bp Feature: domain Description: Rol_Rep_N Location: 1997368-1997635 bp Feature: domain Description: Rep_trans Location: 1997659-1998268 bp Feature: domain Description: Rep_trans Location: 1997659-19982 68 bp Feature: gene Location: 1998536-1998820 bp Feature: gene Location: 1998914-2000773 bp Ori: AOM37971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1999223-1999964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19992 2 3-1999964 bp Feature: domain Description: HNHc Note: nucleases Location: 2000519-2000657 bp Feature: domain Description: HNHc Note: nucleases Location: 2 000519-2 000657 bp Feature: gene Location: 2000892-2001122 bp Feature: gene Location: 2002662-2003048 bp Ori: AOM37973.1 Feature: domain Description: DUF961 Location: 2002680-2002980 bp Feature: domain Description: DUF961 Location: 2 002 680-2 002 980 bp Feature: gene Location: 2348254-2348499 bp Ori: AOM38285.1 Feature: domain Description: HTH_XRE Location: 2348305-2348491 bp Feature: domain Description: HTH_XRE Location: 2 348305-2 348491 bp Feature: gene Location: 2348875-2349354 bp Ori: AOM38286.1 Feature: domain Description: DUF3841 Location: 2348884-2349259 bp Feature: domain Description: DUF3841 Location: 2 348884-2 3492 59 bp Feature: gene Location: 2349532-2351028 bp Ori: AOM38793.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2349940-2350396 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 349940-2 350396 bp Feature: gene Location: 2351174-2351488 bp Ori: AOM38287.1 Feature: domain Description: AlbA_2 Location: 2351213-2351384 bp Feature: domain Description: AlbA_2 Location: 2 3512 13-2 351384 bp Feature: gene Location: 2351604-2352863 bp Ori: AOM38288.1 Feature: domain Description: PRK09290 Location: 2351610-2352855 bp Feature: domain Description: PRK092 90 Location: 2 351610-2 352 855 bp Feature: gene Location: 2409632-2410636 bp Ori: AOM38338.1 Feature: domain Description: Lysozyme_like Location: 2409779-2410241 bp Feature: domain Description: Lysozyme_like Location: 2 409779-2 4102 41 bp Feature: domain Description: Spr Location: 2410268-2410622 bp Feature: domain Description: Spr Location: 2 4102 68-2 41062 2 bp Feature: gene Location: 2410633-2412756 bp Feature: gene Location: 2413815-2415641 bp Ori: AOM38340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2414115-2414814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 414115-2 414814 bp Feature: gene Location: 2417875-2418267 bp Ori: AOM38341.1 Feature: domain Description: TcpE Location: 2417893-2418193 bp Feature: domain Description: TcpE Location: 2 417893-2 418193 bp Feature: gene Location: 2418354-2418851 bp Ori: AOM38342.1 Feature: domain Description: ArdA Location: 2418372-2418837 bp Feature: domain Description: ArdA Location: 2 418372 -2 418837 bp Feature: gene Location: 2419296-2421206 bp Ori: AOM38343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2419629-2420367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 41962 9-2 42 0367 bp Feature: domain Description: HNHc Note: nucleases Location: 2420922-2421087 bp Feature: domain Description: HNHc Note: nucleases Location: 2 42 092 2 -2 42 1087 bp Feature: gene Location: 2421952-2422071 bp Ori: AOM38344.1 Feature: domain Description: DUF3789 Location: 2421961-2422054 bp Feature: domain Description: DUF3789 Location: 2 42 1961-2 42 2 054 bp Feature: gene Location: 2422086-2423270 bp Ori: AOM38345.1 Feature: domain Description: HTH_XRE Location: 2422116-2422260 bp Feature: domain Description: HTH_XRE Location: 2 42 2 116-2 42 2 2 60 bp Feature: domain Description: Rol_Rep_N Location: 2422293-2422557 bp Feature: domain Description: Rol_Rep_N Location: 2 42 2 2 93-2 42 2 557 bp Feature: domain Description: Rep_trans Location: 2422581-2423193 bp Feature: domain Description: Rep_trans Location: 2 42 2 581-2 42 3193 bp Feature: gene Location: 2425184-2425858 bp Ori: AOM38349.1 Feature: domain Description: Zeta_toxin Location: 2425283-2425766 bp Feature: domain Description: Zeta_toxin Location: 2 42 52 83-2 42 5766 bp Feature: gene Location: 2425936-2426175 bp Feature: gene Location: 2426269-2428128 bp Ori: AOM38351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426578-2427319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 6578-2 42 7319 bp Feature: domain Description: HNHc Note: nucleases Location: 2427874-2428012 bp Feature: domain Description: HNHc Note: nucleases Location: 2 42 7874-2 42 8012 bp Feature: gene Location: 2428247-2428477 bp Feature: gene Location: 2430071-2430406 bp Ori: AOM38353.1 Feature: domain Description: RelB_DinJ Location: 2430275-2430398 bp Feature: domain Description: RelB_DinJ Location: 2 4302 75-2 430398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), Lysozyme_like (pfam13702), Spr (COG0791), ArdA (pfam07275), HNHc (smart00507)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF961 (pfam06125), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), TcpE (pfam12648), DUF3789 (pfam12664)
Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384)

Seq: CP012473.1 Enterococcus faecium strain ISMMS_VRE_10 plasmid ISMMS_VRE10_p2 sequence (78475 bp)
Overview 1 RT 1: 34956-39837 bp 2 RT 2: 67677-74379 bp Neighborhood of RT #1 [34956, 39866] RVT-GII GIIM Phage_lysozyme2 PHA01817 Neighborhood of RT #2 [67677, 74379] RVT-GII Feature: gene Location: 34956-35243 bp Feature: gene Location: 35361-35678 bp Feature: gene Location: 36082-37470 bp Ori: AOM39060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36403-37018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6403 -3 7018 bp Feature: domain Description: GIIM Note: maturase Location: 37075-37291 bp Feature: domain Description: GIIM Note: maturase Location: 3 7075-3 7291 bp Feature: gene Location: 37930-38409 bp Feature: gene Location: 38529-39866 bp Ori: AOM39102.1 Feature: domain Description: Phage_lysozyme2 Location: 38715-39180 bp Feature: domain Description: Phage_lysozyme2 Location: 3 8715-3 9180 bp Feature: domain Description: PHA01817 Location: 39306-39837 bp Feature: domain Description: PHA01817 Location: 3 93 06-3 983 7 bp Feature: gene Location: 67677-68795 bp Feature: gene Location: 68828-69115 bp Feature: gene Location: 70622-72484 bp Ori: AOM39096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70931-71669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7093 1-71669 bp Feature: gene Location: 73853-74200 bp Feature: gene Location: 74197-74379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_lysozyme2 (pfam18013), PHA01817 (hypothetical protein)