myRT

myRT report for GCA_001721545.1_ASM172154v1

Download annotations/find similar RTs

Seq: LZPA01000632.1 Klebsiella pneumoniae strain B9888 NODE_22_length_83734_cov_13.074_ID_43, whole genome shotgun sequence (83734 bp)
Overview 1 RT 1: 27617-33087 bp Neighborhood of RT #1 [27617, 33107] conj_conj_conj_TIGR03751 traC_PFL_4706 RVT-UG2 HTH_XRE HTH_XRE Feature: gene Location: 27617-27976 bp Ori: ODP91005.1 Feature: domain Description: conj_conj_conj_TIGR03751 Location: 27635-27962 bp Feature: domain Description: conj_conj_conj_TIGR03751 Location: 27635-27962 bp Feature: gene Location: 27973-30603 bp Ori: ODP91006.1 Feature: domain Description: traC_PFL_4706 Location: 28012-30592 bp Feature: domain Description: traC_PFL_4706 Location: 2801 2-30592 bp Feature: gene Location: 31091-32368 bp Ori: ODP91007.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 31289-32075 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 31 289-32075 bp Feature: gene Location: 32567-32794 bp Ori: ODP91008.1 Feature: domain Description: HTH_XRE Location: 32609-32771 bp Feature: domain Description: HTH_XRE Location: 32609-32771 bp Feature: gene Location: 32877-33107 bp Ori: ODP91009.1 Feature: domain Description: HTH_XRE Location: 32919-33087 bp Feature: domain Description: HTH_XRE Location: 3291 9-33087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_conj_conj_TIGR03751, traC_PFL_4706 (TIGR03744), RVT-UG2, HTH_XRE (smart00530)

Seq: LZPA01000710.1 Klebsiella pneumoniae strain B9888 NODE_2_length_296152_cov_7.4238_ID_3, whole genome shotgun sequence (296152 bp)
Overview 1 RT 1: 11627-19025 bp Neighborhood of RT #1 [11627, 19060] RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 11627-11869 bp Feature: gene Location: 11876-12490 bp Feature: gene Location: 13179-14279 bp Ori: ODP90282.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13359-13893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13359-13893 bp Feature: gene Location: 14394-16641 bp Feature: domain Description: AAA_15 Location: 14397-15318 bp Feature: domain Description: AAA_15 Location: 14397-15318 bp Feature: gene Location: 18041-19060 bp Ori: ODP90283.1 Feature: domain Description: DUF4917 Location: 18101-19025 bp Feature: domain Description: DUF4917 Location: 18101-1902 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: LZPA01000932.1 Klebsiella pneumoniae strain B9888 NODE_4_length_191718_cov_8.32031_ID_7, whole genome shotgun sequence (191718 bp)
Overview 1 RT 1: 177622-182695 bp Neighborhood of RT #1 [177622, 182695] PRK10276 RVT-GII Lipase_GDSL_2 Feature: gene Location: 177622-177939 bp Ori: ODP88649.1 Feature: domain Description: PRK10276 Location: 177628-177742 bp Feature: domain Description: PRK10276 Location: 177628-177742 bp Feature: gene Location: 177939-178178 bp Feature: gene Location: 178256-179741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178658-179348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178658-1793 48 bp Feature: gene Location: 180162-180587 bp Ori: ODP88651.1 Feature: domain Description: Lipase_GDSL_2 Location: 180192-180534 bp Feature: domain Description: Lipase_GDSL_2 Location: 180192-18053 4 bp Feature: gene Location: 182306-182695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Lipase_GDSL_2 (pfam13472)