myRT

myRT report for GCA_001722245.1_ASM172224v1

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Seq: MECP01000023.1 Burkholderia ubonensis strain MSMB0718 Contig_3, whole genome shotgun sequence (278099 bp)
Overview 1 RT 1: 119589-125292 bp Neighborhood of RT #1 [119589, 125292] HpnD RVT-Retrons IS5 Feature: gene Location: 119589-120422 bp Feature: domain Description: HpnD Location: 119622-120414 bp Feature: domain Description: HpnD Location: 1 1 9622-1 2041 4 bp Feature: gene Location: 121038-121475 bp Feature: gene Location: 121938-122924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122058-122622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 22058-1 22622 bp Feature: gene Location: 124523-125002 bp Feature: domain Description: IS5 Location: 124532-124973 bp Feature: domain Description: IS5 Location: 1 24532-1 24973 bp Feature: gene Location: 125005-125292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HpnD (TIGR03465), RVT-Retrons, IS5 (COG3039)

Seq: MECP01000005.1 Burkholderia ubonensis strain MSMB0718 Contig_13, whole genome shotgun sequence (312843 bp)
Overview 1 RT 1: 304351-309731 bp Neighborhood of RT #1 [304351, 309754] PRK02101 Pepdidase_M14_N M14_PaCCP-like RVT-GII GIIM COG3235 Feature: gene Location: 304351-305133 bp Feature: domain Description: PRK02101 Location: 304354-305122 bp Feature: domain Description: PRK02 101 Location: 304354-30512 2 bp Feature: gene Location: 305189-306340 bp Feature: domain Description: Pepdidase_M14_N Location: 305204-305522 bp Feature: domain Description: Pepdidase_M14_N Location: 3052 04-30552 2 bp Feature: domain Description: M14_PaCCP-like Location: 305531-306302 bp Feature: domain Description: M14_PaCCP-like Location: 305531-306302 bp Feature: gene Location: 306805-308169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307138-307753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307138-307753 bp Feature: domain Description: GIIM Note: maturase Location: 307810-308026 bp Feature: domain Description: GIIM Note: maturase Location: 307810-30802 6 bp Feature: gene Location: 308279-308905 bp Feature: gene Location: 309080-309754 bp Feature: domain Description: COG3235 Location: 309131-309731 bp Feature: domain Description: COG32 35 Location: 309131-309731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02101 (peroxide stress protein YaaA), Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), RVT-GII, GIIM (pfam08388), COG3235 (Uncharacterized membrane protein )

Seq: MECP01000052.1 Burkholderia ubonensis strain MSMB0718 Contig_56, whole genome shotgun sequence (12585 bp)
Overview 1 RT 1: 1-3664 bp Neighborhood of RT #1 [1, 3690] RVT-GII GIIM outer_NodT ABC2_membrane_3 Feature: gene Location: 1-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-481 bp Feature: domain Description: GIIM Note: maturase Location: 538-739 bp Feature: domain Description: GIIM Note: maturase Location: 53 8-73 9 bp Feature: gene Location: 1029-2525 bp Feature: domain Description: outer_NodT Location: 1095-2499 bp Feature: domain Description: outer_NodT Location: 1095-2499 bp Feature: gene Location: 2536-3690 bp Feature: domain Description: ABC2_membrane_3 Location: 2635-3664 bp Feature: domain Description: ABC2_membrane_3 Location: 263 5-3 664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT outer_NodT (TIGR01845), RVT-GII, GIIM (pfam08388), ABC2_membrane_3 (pfam12698)

Seq: MECP01000044.1 Burkholderia ubonensis strain MSMB0718 Contig_49, whole genome shotgun sequence (35422 bp)
Overview 1 RT 1: 27780-33813 bp Neighborhood of RT #1 [27780, 33813] AraC VOC RVT-Retrons DUF3141 Feature: gene Location: 27780-28607 bp Feature: domain Description: AraC Location: 28242-28596 bp Feature: domain Description: AraC Location: 2824 2-28596 bp Feature: gene Location: 29046-29432 bp Feature: domain Description: VOC Location: 29061-29382 bp Feature: domain Description: VOC Location: 29061-29382 bp Feature: gene Location: 29735-31084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30200-30836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30200-30836 bp Feature: gene Location: 31333-33591 bp Feature: domain Description: DUF3141 Location: 31459-33190 bp Feature: domain Description: DUF314 1 Location: 314 59-33190 bp Feature: gene Location: 33601-33813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339)