myRT

myRT report for GCA_001722575.1_ASM172257v1

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Seq: MEHB01000031.1 Eisenbergiella tayi strain NML110678 BEI60_contig000031, whole genome shotgun sequence (52243 bp)
Overview 1 RT 1: 42719-49390 bp Neighborhood of RT #1 [42719, 49791] PRK13480 rumA RVT-GII GIIM RAYT HTH_45 HTH_45 Mrr_cat Feature: gene Location: 42719-43663 bp Ori: ODR31081.1 Feature: domain Description: PRK13480 Location: 42722-43601 bp Feature: domain Description: PRK1 3480 Location: 42722-43601 bp Feature: gene Location: 43670-45097 bp Ori: ODR31076.1 Feature: domain Description: rumA Location: 43796-45071 bp Feature: domain Description: rumA Location: 43796-45071 bp Feature: gene Location: 45833-47077 bp Ori: ODR31077.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46037-46694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46037-46694 bp Feature: domain Description: GIIM Note: maturase Location: 46781-46988 bp Feature: domain Description: GIIM Note: maturase Location: 46781 -46988 bp Feature: gene Location: 47136-47564 bp Ori: ODR31082.1 Feature: domain Description: RAYT Location: 47166-47535 bp Feature: domain Description: RAYT Location: 471 66-47535 bp Feature: gene Location: 47746-49791 bp Ori: ODR31078.1 Feature: domain Description: HTH_45 Location: 48184-48289 bp Feature: domain Description: HTH_45 Location: 481 84-48289 bp Feature: domain Description: HTH_45 Location: 48532-48640 bp Feature: domain Description: HTH_45 Location: 48532-48640 bp Feature: domain Description: Mrr_cat Location: 49072-49390 bp Feature: domain Description: Mrr_cat Location: 49072-49390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13480 (3'-5' exoribonuclease YhaM; Provisional), rumA (TIGR00479), RVT-GII, GIIM (pfam08388), RAYT (COG1943), HTH_45 (pfam14947), Mrr_cat (pfam04471)

Seq: MEHB01000039.1 Eisenbergiella tayi strain NML110678 BEI60_contig000039, whole genome shotgun sequence (473413 bp)
Overview 1 RT 1: 270492-276198 bp Neighborhood of RT #1 [270492, 276198] LMWP_ArsC DUF3852 RVT-GII group_II_RT_mat HNHc Feature: gene Location: 270492-270896 bp Ori: ODR28331.1 Feature: domain Description: LMWP_ArsC Location: 270513-270858 bp Feature: domain Description: LMWP_ArsC Location: 2 70513-2 70858 bp Feature: gene Location: 270937-271266 bp Ori: ODR28332.1 Feature: domain Description: DUF3852 Location: 270943-271258 bp Feature: domain Description: DUF3852 Location: 2 70943-2 712 58 bp Feature: gene Location: 271553-273382 bp Ori: ODR28333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271817-272654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 71817-2 72 654 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 272867-272987 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 72 867-2 72 987 bp Feature: domain Description: HNHc Note: nucleases Location: 273200-273353 bp Feature: domain Description: HNHc Note: nucleases Location: 2 732 00-2 73353 bp Feature: gene Location: 274005-275582 bp Feature: gene Location: 275647-276198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LMWP_ArsC (cd16345), DUF3852 (pfam12963), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507)

Seq: MEHB01000027.1 Eisenbergiella tayi strain NML110678 BEI60_contig000027, whole genome shotgun sequence (935576 bp)
Overview 1 RT 1: 574198-579953 bp Neighborhood of RT #1 [574198, 579985] rumA Resolvase RVT-UG7 COG3943 YhcG YhcG_C Feature: gene Location: 574198-575361 bp Ori: ODR33153.1 Feature: domain Description: rumA Location: 574204-575326 bp Feature: domain Description: rumA Location: 574204-5753 26 bp Feature: gene Location: 575453-576324 bp Feature: domain Description: Resolvase Location: 575510-575951 bp Feature: domain Description: Resolvase Location: 575510-575951 bp Feature: gene Location: 576678-578276 bp Ori: ODR33154.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 577098-577494 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 577098-577494 bp Feature: gene Location: 578350-579354 bp Ori: ODR33155.1 Feature: domain Description: COG3943 Location: 578386-579343 bp Feature: domain Description: COG3 943 Location: 5783 86-5793 43 bp Feature: gene Location: 579389-579985 bp Feature: domain Description: YhcG Location: 579398-579500 bp Feature: domain Description: YhcG Location: 5793 98-579500 bp Feature: domain Description: YhcG_C Location: 579506-579953 bp Feature: domain Description: YhcG_C Location: 579506-579953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rumA (TIGR00479), Resolvase (smart00857), RVT-UG7, COG3943 (Uncharacterized conserved protein ), YhcG (COG4804), YhcG_C

Seq: MEHB01000021.1 Eisenbergiella tayi strain NML110678 BEI60_contig000021, whole genome shotgun sequence (213935 bp)
Overview 1 RT 1: 149870-157950 bp Neighborhood of RT #1 [149870, 158021] GGDEF dCache_1 GGDEF RVT-GII Intron_maturas2 Hpt RpfG PleD Feature: gene Location: 149870-151171 bp Ori: ODR35582.1 Feature: domain Description: GGDEF Location: 150743-151136 bp Feature: domain Description: GGDEF Location: 15074 3-151136 bp Feature: gene Location: 151161-152735 bp Ori: ODR35583.1 Feature: domain Description: dCache_1 Location: 151296-151989 bp Feature: domain Description: dCache_1 Location: 151296-151989 bp Feature: domain Description: GGDEF Location: 152238-152706 bp Feature: domain Description: GGDEF Location: 152238-152706 bp Feature: gene Location: 153580-155391 bp Ori: ODR35584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153844-154666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15384 4 -154 666 bp Feature: domain Description: Intron_maturas2 Location: 154741-155074 bp Feature: domain Description: Intron_maturas2 Location: 154 74 1-155074 bp Feature: gene Location: 155581-155949 bp Ori: ODR35585.1 Feature: domain Description: Hpt Location: 155704-155902 bp Feature: domain Description: Hpt Location: 155704 -155902 bp Feature: gene Location: 155949-158021 bp Ori: ODR35586.1 Feature: domain Description: RpfG Location: 155958-156975 bp Feature: domain Description: RpfG Location: 155958-156975 bp Feature: domain Description: PleD Location: 157464-157950 bp Feature: domain Description: PleD Location: 1574 64 -157950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), dCache_1 (pfam02743), RVT-GII, Intron_maturas2 (pfam01348), Hpt (pfam01627), RpfG (COG3437), PleD (COG3706)

Seq: MEHB01000011.1 Eisenbergiella tayi strain NML110678 BEI60_contig000011, whole genome shotgun sequence (277123 bp)
Overview 1 RT 1: 149621-155111 bp Neighborhood of RT #1 [149621, 155111] UgpE LplB RVT-GII GIIM TDP2 Feature: gene Location: 149621-150499 bp Ori: ODR38850.1 Feature: domain Description: UgpE Location: 149639-150494 bp Feature: domain Description: UgpE Location: 149639-15 0494 bp Feature: gene Location: 150511-151455 bp Ori: ODR38851.1 Feature: domain Description: LplB Location: 150541-151450 bp Feature: domain Description: LplB Location: 15 05 41-15 145 0 bp Feature: gene Location: 151638-153035 bp Ori: ODR38852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151959-152586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 195 9-15 25 86 bp Feature: domain Description: GIIM Note: maturase Location: 152640-152868 bp Feature: domain Description: GIIM Note: maturase Location: 15 2640-15 2868 bp Feature: gene Location: 153568-154671 bp Ori: ODR38853.1 Feature: domain Description: TDP2 Location: 153775-154384 bp Feature: domain Description: TDP2 Location: 15 3775 -15 4384 bp Feature: gene Location: 154806-155111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), LplB (COG4209), RVT-GII, GIIM (pfam08388), TDP2 (cd09080)

Seq: MEHB01000002.1 Eisenbergiella tayi strain NML110678 BEI60_contig000002, whole genome shotgun sequence (150804 bp)
Overview 1 RT 1: 95789-100898 bp Neighborhood of RT #1 [95789, 101206] RVT-Retrons List_Bact_rpt Feature: gene Location: 95789-96367 bp Feature: gene Location: 96468-96767 bp Feature: gene Location: 96802-97785 bp Ori: ODR43369.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96970-97525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96 970-97525 bp Feature: gene Location: 98045-98347 bp Feature: gene Location: 98354-101206 bp Ori: ODR43371.1 Feature: domain Description: List_Bact_rpt Location: 100784-100898 bp Feature: domain Description: List_Bact_rpt Location: 100784-100898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, List_Bact_rpt (TIGR02543)