myRT

myRT report for GCA_001723195.1_ASM172319v1

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Seq: LDOA01000001.1 Shewanella xiamenensis strain T17 unitig0, whole genome shotgun sequence (5085271 bp)
Overview 1 RT 1: 681514-687430 bp 2 RT 2: 1127790-1135231 bp 3 RT 3: 1178864-1184868 bp 4 RT 4: 2347499-2353881 bp 5 RT 5: 2471009-2473743 bp 6 RT 6: 2836745-2844762 bp 7 RT 7: 4399284-4405605 bp 8 RT 8: 4579917-4585274 bp Neighborhood of RT #1 [681514, 687430] PRK11776 YhaK RVT-GII GIIM BamE Neighborhood of RT #2 [1127790, 1135231] YegI RVT-GII GIIM Neighborhood of RT #3 [1178864, 1185578] DDE_Tnp_1 RVT-GII GIIM COG3415 DDE_3 DUF4062 Neighborhood of RT #4 [2347499, 2353881] PRK09009 COG3046 RVT-GII GIIM Neighborhood of RT #5 [2471009, 2473829] RVT-GII GIIM DUF2846 Neighborhood of RT #6 [2836745, 2845139] RAYT RAYT RVT-GII GIIM TPR TPR TPR_2 DUF3142 Neighborhood of RT #7 [4399284, 4405605] RVT-GII GIIM DUF4062 Neighborhood of RT #8 [4579917, 4585274] Zn_Tnp_IS91 Y2_Tnp HNHc RVT-GII GIIM PRK13746 Feature: gene Location: 681514-682890 bp Feature: domain Description: PRK11776 Location: 681520-682888 bp Feature: domain Description: PRK1 1 776 Location: 681 520-682888 bp Feature: gene Location: 683210-684067 bp Feature: domain Description: YhaK Location: 683240-684053 bp Feature: domain Description: YhaK Location: 683240-684053 bp Feature: gene Location: 685235-686584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685517-686135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68551 7-6861 35 bp Feature: domain Description: GIIM Note: maturase Location: 686183-686387 bp Feature: domain Description: GIIM Note: maturase Location: 6861 83-686387 bp Feature: gene Location: 686677-687048 bp Feature: domain Description: BamE Location: 686689-687025 bp Feature: domain Description: BamE Location: 686689-687025 bp Feature: gene Location: 687149-687430 bp Feature: gene Location: 1127790-1129289 bp Feature: domain Description: YegI Location: 1128237-1128942 bp Feature: domain Description: YegI Location: 1 1 28237-1 1 28942 bp Feature: gene Location: 1130642-1131817 bp Feature: gene Location: 1131899-1133248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132181-1132799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 321 81 -1 1 32799 bp Feature: domain Description: GIIM Note: maturase Location: 1132847-1133051 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 32847-1 1 33051 bp Feature: gene Location: 1133876-1134157 bp Feature: gene Location: 1134641-1135231 bp Feature: gene Location: 1178864-1179142 bp Feature: gene Location: 1179252-1180460 bp Feature: domain Description: DDE_Tnp_1 Location: 1179522-1180227 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 79522-1 1 80227 bp Feature: gene Location: 1181962-1183311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1182244-1182862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 82244-1 1 82862 bp Feature: domain Description: GIIM Note: maturase Location: 1182910-1183114 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 8291 0-1 1 831 1 4 bp Feature: gene Location: 1183560-1184591 bp Feature: domain Description: COG3415 Location: 1183626-1184037 bp Feature: domain Description: COG341 5 Location: 1 1 83626-1 1 84037 bp Feature: domain Description: DDE_3 Location: 1184091-1184517 bp Feature: domain Description: DDE_3 Location: 1 1 84091 -1 1 8451 7 bp Feature: gene Location: 1184607-1185578 bp Feature: domain Description: DUF4062 Location: 1184625-1184868 bp Feature: domain Description: DUF4062 Location: 1 1 84625-1 1 84868 bp Feature: gene Location: 2347499-2348209 bp Feature: domain Description: PRK09009 Location: 2347502-2348207 bp Feature: domain Description: PRK09009 Location: 2347502-2348207 bp Feature: gene Location: 2348235-2349812 bp Feature: domain Description: COG3046 Location: 2348280-2349804 bp Feature: domain Description: COG3046 Location: 2348280-2349804 bp Feature: gene Location: 2351067-2352416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351349-2351967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351 349-2351 967 bp Feature: domain Description: GIIM Note: maturase Location: 2352015-2352219 bp Feature: domain Description: GIIM Note: maturase Location: 235201 5-235221 9 bp Feature: gene Location: 2352498-2353319 bp Feature: gene Location: 2353666-2353881 bp Feature: gene Location: 2471009-2472358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2471291-2471909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2471 291 -2471 909 bp Feature: domain Description: GIIM Note: maturase Location: 2471957-2472161 bp Feature: domain Description: GIIM Note: maturase Location: 2471 957-24721 61 bp Feature: gene Location: 2472948-2473292 bp Feature: gene Location: 2473365-2473829 bp Feature: domain Description: DUF2846 Location: 2473464-2473743 bp Feature: domain Description: DUF2846 Location: 2473464-2473743 bp Feature: gene Location: 2836745-2837779 bp Feature: domain Description: RAYT Location: 2836793-2836997 bp Feature: domain Description: RAYT Location: 2836793-2836997 bp Feature: domain Description: RAYT Location: 2837153-2837339 bp Feature: domain Description: RAYT Location: 28371 53-2837339 bp Feature: gene Location: 2838043-2838555 bp Feature: gene Location: 2839176-2840525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2839458-2840076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2839458-2840076 bp Feature: domain Description: GIIM Note: maturase Location: 2840124-2840328 bp Feature: domain Description: GIIM Note: maturase Location: 28401 24-2840328 bp Feature: gene Location: 2841485-2843764 bp Feature: domain Description: TPR Location: 2841911-2841995 bp Feature: domain Description: TPR Location: 2841 91 1 -2841 995 bp Feature: domain Description: TPR Location: 2842571-2842613 bp Feature: domain Description: TPR Location: 2842571 -284261 3 bp Feature: domain Description: TPR_2 Location: 2842649-2842742 bp Feature: domain Description: TPR_2 Location: 2842649-2842742 bp Feature: gene Location: 2843754-2845139 bp Feature: domain Description: DUF3142 Location: 2844072-2844762 bp Feature: domain Description: DUF31 42 Location: 2844072-2844762 bp Feature: gene Location: 4399284-4400777 bp Feature: gene Location: 4400767-4401441 bp Feature: gene Location: 4402635-4403984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4402917-4403535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440291 7-4403535 bp Feature: domain Description: GIIM Note: maturase Location: 4403583-4403787 bp Feature: domain Description: GIIM Note: maturase Location: 4403583-4403787 bp Feature: gene Location: 4404066-4405097 bp Feature: domain Description: DUF4062 Location: 4404084-4404327 bp Feature: domain Description: DUF4062 Location: 4404084-4404327 bp Feature: gene Location: 4405186-4405605 bp Feature: gene Location: 4579917-4581002 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4579938-4580211 bp Feature: domain Description: Zn_Tnp_IS91 Location: 4579938-458021 1 bp Feature: domain Description: Y2_Tnp Location: 4580337-4580817 bp Feature: domain Description: Y2_Tnp Location: 4580337-458081 7 bp Feature: gene Location: 4581256-4581828 bp Feature: domain Description: HNHc Note: nucleases Location: 4581415-4581559 bp Feature: domain Description: HNHc Note: nucleases Location: 4581 41 5-4581 559 bp Feature: gene Location: 4582411-4583760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582693-4583311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582693-458331 1 bp Feature: domain Description: GIIM Note: maturase Location: 4583359-4583563 bp Feature: domain Description: GIIM Note: maturase Location: 4583359-4583563 bp Feature: gene Location: 4583849-4584640 bp Feature: domain Description: PRK13746 Location: 4583852-4584632 bp Feature: domain Description: PRK1 3746 Location: 4583852-4584632 bp Feature: gene Location: 4585053-4585274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11776 (ATP-dependent RNA helicase DbpA; Provisional), YhaK (COG1741), RVT-GII, GIIM (pfam08388), BamE (COG2913), YegI (COG4248), DDE_Tnp_1 (pfam01609), COG3415 (Transposase ), DDE_3 (pfam13358), DUF4062 (pfam13271)
PRK09009 (SDR family oxidoreductase), COG3046 (Uncharacterized protein related to deoxyribodipyrimidine photolyase ), DUF2846 (pfam11008), RAYT (COG1943), TPR (smart00028), TPR_2 (pfam07719), DUF3142 (pfam11340), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), HNHc (smart00507)
PRK13746 (aminoglycoside resistance protein; Provisional)