myRT

myRT report for GCA_001723665.1_ASM172366v1

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Seq: MCBW01000008.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_11_length_94039_cov_152.825_ID_5, whole genome shotgun sequence (47239 bp)
Overview 1 RT 1: 13200-17608 bp Neighborhood of RT #1 [13200, 17625] MFS_1_like GEWL RVT-GII GIIM HNH RVT_N RVT-GII GEWL MORN MORN MORN MORN Feature: gene Location: 13200-14327 bp Feature: domain Description: MFS_1_like Location: 13218-14262 bp Feature: domain Description: MFS_1 _like Location: 1 321 8-1 4262 bp Feature: gene Location: 14339-14749 bp Feature: domain Description: GEWL Location: 14507-14738 bp Feature: domain Description: GEWL Location: 1 4507-1 4738 bp Feature: gene Location: 14746-15534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14749-14884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4749-1 4884 bp Feature: domain Description: GIIM Note: maturase Location: 14989-15139 bp Feature: domain Description: GIIM Note: maturase Location: 1 4989-1 51 39 bp Feature: domain Description: HNH Note: nucleases Location: 15349-15484 bp Feature: domain Description: HNH Note: nucleases Location: 1 5349-1 5484 bp Feature: gene Location: 15548-16060 bp Feature: domain Description: RVT_N Location: 15635-15860 bp Feature: domain Description: RVT_N Location: 1 5635-1 5860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15869-16031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5869-1 6031 bp Feature: gene Location: 16644-17033 bp Feature: domain Description: GEWL Location: 16779-16935 bp Feature: domain Description: GEWL Location: 1 6779-1 6935 bp Feature: gene Location: 17047-17625 bp Feature: domain Description: MORN Location: 17266-17323 bp Feature: domain Description: MORN Location: 1 7266-1 7323 bp Feature: domain Description: MORN Location: 17332-17359 bp Feature: domain Description: MORN Location: 1 7332-1 7359 bp Feature: domain Description: MORN Location: 17473-17539 bp Feature: domain Description: MORN Location: 1 7473-1 7539 bp Feature: domain Description: MORN Location: 17542-17608 bp Feature: domain Description: MORN Location: 1 7542-1 7608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_1_like (pfam12832), GEWL (cd01021), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), MORN (smart00698)

Seq: MCBW01000054.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_12_length_85650_cov_176.665_ID_85, whole genome shotgun sequence (85650 bp)
Overview 1 RT 1: 32147-37911 bp Neighborhood of RT #1 [32147, 37913] M48C_Oma1_like Hemerythrin RVT_N RVT-GII GIIM hemeryth_dom argS Feature: gene Location: 32147-32920 bp Feature: domain Description: M48C_Oma1_like Location: 32342-32867 bp Feature: domain Description: M48C_Oma1_like Location: 32 342 -32 867 bp Feature: gene Location: 33344-33643 bp Feature: domain Description: Hemerythrin Location: 33350-33542 bp Feature: domain Description: Hemerythrin Location: 33350-33542 bp Feature: gene Location: 33771-35210 bp Feature: domain Description: RVT_N Location: 33840-34020 bp Feature: domain Description: RVT_N Location: 33840-3402 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34116-34728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34116-3472 8 bp Feature: domain Description: GIIM Note: maturase Location: 34833-35061 bp Feature: domain Description: GIIM Note: maturase Location: 34833-35061 bp Feature: gene Location: 35753-35944 bp Feature: domain Description: hemeryth_dom Location: 35768-35876 bp Feature: domain Description: hemeryth_dom Location: 35768-35876 bp Feature: gene Location: 36207-37913 bp Feature: domain Description: argS Location: 36213-37911 bp Feature: domain Description: argS Location: 362 13-37911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M48C_Oma1_like (cd07342), Hemerythrin (TIGR00058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), hemeryth_dom (TIGR02481), argS (TIGR00456)

Seq: MCBW01000010.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_13_length_76817_cov_154.045_ID_641, whole genome shotgun sequence (76817 bp)
Overview 1 RT 1: 51202-55033 bp 2 RT 2: 61943-66809 bp Neighborhood of RT #1 [51202, 55033] DUF1566 RVT_N RVT_N RVT-GII HNH Neighborhood of RT #2 [61943, 66814] PRK14342 RVT_N RVT-GII GIIM McrA OM_YfiO rluD Feature: gene Location: 51202-52701 bp Feature: domain Description: DUF1566 Location: 52297-52690 bp Feature: domain Description: DUF1566 Location: 52297-52690 bp Feature: gene Location: 53287-53472 bp Feature: domain Description: RVT_N Location: 53344-53464 bp Feature: domain Description: RVT_N Location: 53 3 44-53 464 bp Feature: gene Location: 53489-53917 bp Feature: domain Description: RVT_N Location: 53495-53585 bp Feature: domain Description: RVT_N Location: 53 495-53 585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53633-53906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 63 3 -53 906 bp Feature: gene Location: 54270-54428 bp Feature: domain Description: HNH Note: nucleases Location: 54276-54366 bp Feature: domain Description: HNH Note: nucleases Location: 54276-543 66 bp Feature: gene Location: 54644-55033 bp Feature: gene Location: 61943-62428 bp Feature: domain Description: PRK14342 Location: 61955-62414 bp Feature: domain Description: PRK143 42 Location: 61955-62414 bp Feature: gene Location: 62605-62739 bp Feature: gene Location: 62973-64844 bp Feature: domain Description: RVT_N Location: 63126-63387 bp Feature: domain Description: RVT_N Location: 63 126-63 3 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63450-64098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 450-64098 bp Feature: domain Description: GIIM Note: maturase Location: 64200-64431 bp Feature: domain Description: GIIM Note: maturase Location: 64200-6443 1 bp Feature: domain Description: McrA Location: 64578-64785 bp Feature: domain Description: McrA Location: 64578-64785 bp Feature: gene Location: 65090-65869 bp Feature: domain Description: OM_YfiO Location: 65108-65828 bp Feature: domain Description: OM_YfiO Location: 65108-65828 bp Feature: gene Location: 65894-66814 bp Feature: domain Description: rluD Location: 65906-66809 bp Feature: domain Description: rluD Location: 65906-66809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT_N (pfam13655), RVT-GII, HNH (pfam01844), PRK14342 (lipoyl(octanoyl) transferase LipB), GIIM (pfam08388), McrA (COG4058), OM_YfiO (TIGR03302), rluD (PRK11180)

Seq: MCBW01000018.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_21_length_57274_cov_161.284_ID_1343, whole genome shotgun sequence (57274 bp)
Overview 1 RT 1: 26858-31700 bp Neighborhood of RT #1 [26858, 31720] PRK03170 RVT_N RVT-GII GIIM HNH NlpB DUF3108 Feature: gene Location: 26858-27733 bp Feature: domain Description: PRK03170 Location: 26861-27725 bp Feature: domain Description: PRK03170 Location: 26861-27725 bp Feature: gene Location: 27945-28073 bp Feature: gene Location: 28413-30203 bp Feature: domain Description: RVT_N Location: 28500-28746 bp Feature: domain Description: RVT_N Location: 28500-2874 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28809-29457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28809-294 57 bp Feature: domain Description: GIIM Note: maturase Location: 29562-29790 bp Feature: domain Description: GIIM Note: maturase Location: 29562-29790 bp Feature: domain Description: HNH Note: nucleases Location: 30018-30153 bp Feature: domain Description: HNH Note: nucleases Location: 30018-30153 bp Feature: gene Location: 30378-30974 bp Feature: domain Description: NlpB Location: 30384-30951 bp Feature: domain Description: NlpB Location: 30384 -30951 bp Feature: gene Location: 31016-31720 bp Feature: domain Description: DUF3108 Location: 31082-31700 bp Feature: domain Description: DUF3108 Location: 31082-31700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03170 (dihydrodipicolinate synthase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), NlpB (COG3317), DUF3108 (pfam11306)

Seq: MCBW01000059.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_34_length_28637_cov_86.0548_ID_63, whole genome shotgun sequence (28637 bp)
Overview 1 RT 1: 5602-9691 bp Neighborhood of RT #1 [5602, 9691] Couple_hipA HipA_C Polbeta RVT-DGRs MutS_I Feature: gene Location: 5602-6783 bp Feature: domain Description: Couple_hipA Location: 5635-5926 bp Feature: domain Description: Couple_hipA Location: 5 635 -5 926 bp Feature: domain Description: HipA_C Location: 6052-6712 bp Feature: domain Description: HipA_C Location: 605 2-6712 bp Feature: gene Location: 7184-7465 bp Feature: domain Description: Polbeta Location: 7214-7460 bp Feature: domain Description: Polbeta Location: 7214-7460 bp Feature: gene Location: 7708-8604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7816-8398 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7816-8398 bp Feature: gene Location: 9034-9351 bp Feature: domain Description: MutS_I Location: 9058-9319 bp Feature: domain Description: MutS_I Location: 905 8-9319 bp Feature: gene Location: 9548-9691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), Polbeta (pfam18765), RVT-DGRs, MutS_I (pfam01624)

Seq: MCBW01000002.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_3_length_202859_cov_195.883_ID_1431, whole genome shotgun sequence (202859 bp)
Overview 1 RT 1: 145911-153852 bp Neighborhood of RT #1 [145911, 153890] PRK05749 PdxJ RVT_N RVT-GII YkfC HNH WD40 KOG0266 WD40 Peptidase_C14 Feature: gene Location: 145911-147131 bp Feature: domain Description: PRK05749 Location: 145914-147126 bp Feature: domain Description: PRK05749 Location: 145914-147126 bp Feature: gene Location: 147124-147843 bp Feature: domain Description: PdxJ Location: 147142-147835 bp Feature: domain Description: PdxJ Location: 147142-147835 bp Feature: gene Location: 148361-150151 bp Feature: domain Description: RVT_N Location: 148448-148694 bp Feature: domain Description: RVT_N Location: 148448-1486 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148757-149405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148757-149405 bp Feature: domain Description: YkfC Location: 149474-149762 bp Feature: domain Description: YkfC Location: 149474-14976 2 bp Feature: domain Description: HNH Note: nucleases Location: 149966-150101 bp Feature: domain Description: HNH Note: nucleases Location: 14996 6 -150101 bp Feature: gene Location: 150721-151005 bp Feature: gene Location: 151014-153890 bp Feature: domain Description: WD40 Location: 151086-151551 bp Feature: domain Description: WD40 Location: 151086 -151551 bp Feature: domain Description: KOG0266 Location: 151569-152067 bp Feature: domain Description: KOG026 6 Location: 15156 9-15206 7 bp Feature: domain Description: WD40 Location: 152400-152745 bp Feature: domain Description: WD40 Location: 152400-152745 bp Feature: domain Description: Peptidase_C14 Location: 153192-153852 bp Feature: domain Description: Peptidase_C14 Location: 153192-153852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed), PdxJ (pfam03740), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), Peptidase_C14 (pfam00656)

Seq: MCBW01000032.1 Candidatus Marithrix sp. Canyon 246 clone 2 NODE_41_length_19336_cov_162.29_ID_89, whole genome shotgun sequence (19335 bp)
Overview 1 RT 1: 7138-14610 bp Neighborhood of RT #1 [7138, 14663] COG4637 PRK07209 RVT_N RVT-GII YkfC HNH_5 PRK07209 PRK07207 Feature: gene Location: 7138-8244 bp Feature: domain Description: COG4637 Location: 7162-8179 bp Feature: domain Description: COG4637 Location: 7 162-817 9 bp Feature: gene Location: 8306-9163 bp Feature: domain Description: PRK07209 Location: 8459-9161 bp Feature: domain Description: PRK07 209 Location: 8459-9161 bp Feature: gene Location: 9120-10877 bp Feature: domain Description: RVT_N Location: 9180-9423 bp Feature: domain Description: RVT_N Location: 9180-9423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9474-10146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947 4-10146 bp Feature: domain Description: YkfC Location: 10158-10542 bp Feature: domain Description: YkfC Location: 10158-10542 bp Feature: domain Description: HNH_5 Location: 10659-10794 bp Feature: domain Description: HNH_5 Location: 10659-107 94 bp Feature: gene Location: 11496-11933 bp Feature: domain Description: PRK07209 Location: 11502-11931 bp Feature: domain Description: PRK07 209 Location: 11502-11931 bp Feature: gene Location: 11964-14663 bp Feature: domain Description: PRK07207 Location: 11973-14610 bp Feature: domain Description: PRK07 207 Location: 1197 3-14610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH_5 (pfam14279), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha)