myRT

myRT report for GCA_001723685.1_ASM172368v1

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Seq: MCBX01000014.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_16_length_76588_cov_175.943_ID_19, whole genome shotgun sequence (60744 bp)
Overview 1 RT 1: 26870-31712 bp Neighborhood of RT #1 [26870, 31732] PRK03170 RVT_N RVT-GII GIIM HNH NlpB DUF3108 Feature: gene Location: 26870-27745 bp Feature: domain Description: PRK03170 Location: 26873-27737 bp Feature: domain Description: PRK031 70 Location: 26873-27737 bp Feature: gene Location: 27957-28085 bp Feature: gene Location: 28425-30215 bp Feature: domain Description: RVT_N Location: 28512-28758 bp Feature: domain Description: RVT_N Location: 2851 2-28758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28821-29469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28821 -29469 bp Feature: domain Description: GIIM Note: maturase Location: 29574-29802 bp Feature: domain Description: GIIM Note: maturase Location: 29574-29802 bp Feature: domain Description: HNH Note: nucleases Location: 30030-30165 bp Feature: domain Description: HNH Note: nucleases Location: 30030-301 65 bp Feature: gene Location: 30390-30986 bp Feature: domain Description: NlpB Location: 30396-30963 bp Feature: domain Description: NlpB Location: 30396-30963 bp Feature: gene Location: 31028-31732 bp Feature: domain Description: DUF3108 Location: 31094-31712 bp Feature: domain Description: DUF31 08 Location: 31 094-31 71 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03170 (dihydrodipicolinate synthase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), NlpB (COG3317), DUF3108 (pfam11306)

Seq: MCBX01000042.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_28_length_28650_cov_91.792_ID_61, whole genome shotgun sequence (28650 bp)
Overview 1 RT 1: 5647-9736 bp Neighborhood of RT #1 [5647, 9736] Couple_hipA HipA_C Polbeta RVT-DGRs MutS_I Feature: gene Location: 5647-6828 bp Feature: domain Description: Couple_hipA Location: 5680-5971 bp Feature: domain Description: Couple_hipA Location: 5680-5971 bp Feature: domain Description: HipA_C Location: 6097-6757 bp Feature: domain Description: HipA_C Location: 6097-6757 bp Feature: gene Location: 7229-7510 bp Feature: domain Description: Polbeta Location: 7259-7505 bp Feature: domain Description: Polbeta Location: 72 59-7505 bp Feature: gene Location: 7753-8649 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7861-8443 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7861-8443 bp Feature: gene Location: 9079-9396 bp Feature: domain Description: MutS_I Location: 9103-9364 bp Feature: domain Description: MutS_I Location: 9103-9364 bp Feature: gene Location: 9593-9736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), Polbeta (pfam18765), RVT-DGRs, MutS_I (pfam01624)

Seq: MCBX01000001.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_2_length_260046_cov_196.351_ID_853, whole genome shotgun sequence (260046 bp)
Overview 1 RT 1: 109030-114119 bp Neighborhood of RT #1 [109030, 114124] RVT_N RVT-GII YkfC HNH PdxJ PRK05749 Feature: gene Location: 109030-109314 bp Feature: gene Location: 109680-109877 bp Feature: gene Location: 109884-111674 bp Feature: domain Description: RVT_N Location: 109971-110217 bp Feature: domain Description: RVT_N Location: 109971-110217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110280-110928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110280-110928 bp Feature: domain Description: YkfC Location: 110997-111285 bp Feature: domain Description: YkfC Location: 110997-111285 bp Feature: domain Description: HNH Note: nucleases Location: 111489-111624 bp Feature: domain Description: HNH Note: nucleases Location: 111489-111624 bp Feature: gene Location: 112192-112911 bp Feature: domain Description: PdxJ Location: 112210-112903 bp Feature: domain Description: PdxJ Location: 112210-112903 bp Feature: gene Location: 112904-114124 bp Feature: domain Description: PRK05749 Location: 112907-114119 bp Feature: domain Description: PRK05749 Location: 112907-114119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PdxJ (pfam03740), PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed)

Seq: MCBX01000024.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_30_length_26067_cov_143.16_ID_67, whole genome shotgun sequence (26067 bp)
Overview 1 RT 1: 440-4271 bp 2 RT 2: 11710-16047 bp Neighborhood of RT #1 [440, 4271] DUF1566 RVT_N RVT_N RVT-GII HNH Neighborhood of RT #2 [11710, 16052] RVT_N RVT-GII GIIM McrA OM_YfiO rluD Feature: gene Location: 440-1939 bp Feature: domain Description: DUF1566 Location: 1535-1928 bp Feature: domain Description: DUF1566 Location: 1535-1928 bp Feature: gene Location: 2525-2710 bp Feature: domain Description: RVT_N Location: 2582-2702 bp Feature: domain Description: RVT_N Location: 2582-2702 bp Feature: gene Location: 2727-3155 bp Feature: domain Description: RVT_N Location: 2733-2823 bp Feature: domain Description: RVT_N Location: 2733-2823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871-3144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871-314 4 bp Feature: gene Location: 3508-3666 bp Feature: domain Description: HNH Note: nucleases Location: 3514-3604 bp Feature: domain Description: HNH Note: nucleases Location: 3514 -3604 bp Feature: gene Location: 3882-4271 bp Feature: gene Location: 11710-11838 bp Feature: gene Location: 11843-11977 bp Feature: gene Location: 12211-14082 bp Feature: domain Description: RVT_N Location: 12364-12625 bp Feature: domain Description: RVT_N Location: 12364 -12625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12688-13336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12688-13336 bp Feature: domain Description: GIIM Note: maturase Location: 13438-13669 bp Feature: domain Description: GIIM Note: maturase Location: 134 38-13669 bp Feature: domain Description: McrA Location: 13816-14023 bp Feature: domain Description: McrA Location: 13816-14 023 bp Feature: gene Location: 14328-15107 bp Feature: domain Description: OM_YfiO Location: 14346-15066 bp Feature: domain Description: OM_YfiO Location: 14 34 6-15066 bp Feature: gene Location: 15132-16052 bp Feature: domain Description: rluD Location: 15144-16047 bp Feature: domain Description: rluD Location: 1514 4 -1604 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT_N (pfam13655), RVT-GII, HNH (pfam01844), GIIM (pfam08388), McrA (COG4058), OM_YfiO (TIGR03302), rluD (PRK11180)

Seq: MCBX01000025.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_31_length_20438_cov_167.946_ID_77, whole genome shotgun sequence (20438 bp)
Overview 1 RT 1: 7150-14622 bp Neighborhood of RT #1 [7150, 14675] COG4637 PRK07209 RVT_N RVT-GII YkfC HNH_5 PRK07209 PRK07207 Feature: gene Location: 7150-8256 bp Feature: domain Description: COG4637 Location: 7174-8191 bp Feature: domain Description: COG4637 Location: 7174-8191 bp Feature: gene Location: 8318-9175 bp Feature: domain Description: PRK07209 Location: 8471-9173 bp Feature: domain Description: PRK07209 Location: 8471-9173 bp Feature: gene Location: 9132-10889 bp Feature: domain Description: RVT_N Location: 9192-9435 bp Feature: domain Description: RVT_N Location: 9192-9435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9486-10158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9486-1015 8 bp Feature: domain Description: YkfC Location: 10170-10554 bp Feature: domain Description: YkfC Location: 10170-105 5 4 bp Feature: domain Description: HNH_5 Location: 10671-10806 bp Feature: domain Description: HNH_5 Location: 10671-10806 bp Feature: gene Location: 11508-11945 bp Feature: domain Description: PRK07209 Location: 11514-11943 bp Feature: domain Description: PRK07209 Location: 115 14-11943 bp Feature: gene Location: 11976-14675 bp Feature: domain Description: PRK07207 Location: 11985-14622 bp Feature: domain Description: PRK07207 Location: 11985 -14622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH_5 (pfam14279), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha)

Seq: MCBX01000003.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_4_length_228240_cov_209.941_ID_839, whole genome shotgun sequence (228240 bp)
Overview 1 RT 1: 174725-180489 bp Neighborhood of RT #1 [174725, 180491] M48C_Oma1_like Hemerythrin RVT_N RVT-GII GIIM hemeryth_dom argS Feature: gene Location: 174725-175498 bp Feature: domain Description: M48C_Oma1_like Location: 174920-175445 bp Feature: domain Description: M48C_Oma1_like Location: 174920-175445 bp Feature: gene Location: 175922-176221 bp Feature: domain Description: Hemerythrin Location: 175928-176120 bp Feature: domain Description: Hemerythrin Location: 175928-176 120 bp Feature: gene Location: 176349-177788 bp Feature: domain Description: RVT_N Location: 176418-176598 bp Feature: domain Description: RVT_N Location: 176 418-176 598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176694-177306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176 6 94-177306 bp Feature: domain Description: GIIM Note: maturase Location: 177411-177639 bp Feature: domain Description: GIIM Note: maturase Location: 177411-1776 39 bp Feature: gene Location: 178331-178522 bp Feature: domain Description: hemeryth_dom Location: 178346-178454 bp Feature: domain Description: hemeryth_dom Location: 178346 -178454 bp Feature: gene Location: 178785-180491 bp Feature: domain Description: argS Location: 178791-180489 bp Feature: domain Description: argS Location: 178791-180489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M48C_Oma1_like (cd07342), Hemerythrin (TIGR00058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), hemeryth_dom (TIGR02481), argS (TIGR00456)

Seq: MCBX01000007.1 Candidatus Marithrix sp. Canyon 246 clone 3 NODE_9_length_115287_cov_154.844_ID_93, whole genome shotgun sequence (115287 bp)
Overview 1 RT 1: 97651-102011 bp Neighborhood of RT #1 [97651, 102076] MORN MORN MORN MORN GEWL RVT_N RVT-GII RVT-GII GIIM HNH GEWL MFS_1_like Feature: gene Location: 97651-98229 bp Feature: domain Description: MORN Location: 97870-97927 bp Feature: domain Description: MORN Location: 97 87 0-97 927 bp Feature: domain Description: MORN Location: 97936-97963 bp Feature: domain Description: MORN Location: 97 936-97 963 bp Feature: domain Description: MORN Location: 98077-98143 bp Feature: domain Description: MORN Location: 9807 7 -98143 bp Feature: domain Description: MORN Location: 98146-98212 bp Feature: domain Description: MORN Location: 98146-98212 bp Feature: gene Location: 98243-98632 bp Feature: domain Description: GEWL Location: 98378-98534 bp Feature: domain Description: GEWL Location: 9837 8-98534 bp Feature: gene Location: 99216-99728 bp Feature: domain Description: RVT_N Location: 99303-99528 bp Feature: domain Description: RVT_N Location: 99303-99528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99537-99699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99537 -99699 bp Feature: gene Location: 99742-100530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99745-99880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997 45-99880 bp Feature: domain Description: GIIM Note: maturase Location: 99985-100135 bp Feature: domain Description: GIIM Note: maturase Location: 99985-100135 bp Feature: domain Description: HNH Note: nucleases Location: 100345-100480 bp Feature: domain Description: HNH Note: nucleases Location: 100345-100480 bp Feature: gene Location: 100527-100937 bp Feature: domain Description: GEWL Location: 100695-100926 bp Feature: domain Description: GEWL Location: 100695-100926 bp Feature: gene Location: 100949-102076 bp Feature: domain Description: MFS_1_like Location: 100967-102011 bp Feature: domain Description: MFS_1_like Location: 100967 -102011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MORN (smart00698), GEWL (cd01021), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MFS_1_like (pfam12832)