myRT

myRT report for GCA_001723695.1_ASM172369v1

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Seq: MCBY01000007.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_10_length_94950_cov_102.285_ID_67, whole genome shotgun sequence (94950 bp)
Overview 1 RT 1: 13430-17838 bp Neighborhood of RT #1 [13430, 17855] MFS_1_like GEWL RVT-GII GIIM HNH RVT_N RVT-GII GEWL MORN MORN MORN MORN Feature: gene Location: 13430-14557 bp Feature: domain Description: MFS_1_like Location: 13448-14492 bp Feature: domain Description: MFS_1 _like Location: 1 3448-1 4492 bp Feature: gene Location: 14569-14979 bp Feature: domain Description: GEWL Location: 14737-14968 bp Feature: domain Description: GEWL Location: 1 4737-1 4968 bp Feature: gene Location: 14976-15764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14979-15114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4979-1 51 1 4 bp Feature: domain Description: GIIM Note: maturase Location: 15219-15369 bp Feature: domain Description: GIIM Note: maturase Location: 1 521 9-1 5369 bp Feature: domain Description: HNH Note: nucleases Location: 15579-15714 bp Feature: domain Description: HNH Note: nucleases Location: 1 5579-1 571 4 bp Feature: gene Location: 15778-16290 bp Feature: domain Description: RVT_N Location: 15865-16090 bp Feature: domain Description: RVT_N Location: 1 5865-1 6090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16099-16261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6099-1 6261 bp Feature: gene Location: 16874-17263 bp Feature: domain Description: GEWL Location: 17009-17165 bp Feature: domain Description: GEWL Location: 1 7009-1 71 65 bp Feature: gene Location: 17277-17855 bp Feature: domain Description: MORN Location: 17496-17553 bp Feature: domain Description: MORN Location: 1 7496-1 7553 bp Feature: domain Description: MORN Location: 17562-17589 bp Feature: domain Description: MORN Location: 1 7562-1 7589 bp Feature: domain Description: MORN Location: 17703-17769 bp Feature: domain Description: MORN Location: 1 7703-1 7769 bp Feature: domain Description: MORN Location: 17772-17838 bp Feature: domain Description: MORN Location: 1 7772-1 7838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_1_like (pfam12832), GEWL (cd01021), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), MORN (smart00698)

Seq: MCBY01000012.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_15_length_81203_cov_120.419_ID_85, whole genome shotgun sequence (81203 bp)
Overview 1 RT 1: 47724-53437 bp Neighborhood of RT #1 [47724, 53490] argS hemeryth_dom RVT_N RVT-GII GIIM Hemerythrin M48C_Oma1_like Feature: gene Location: 47724-49430 bp Feature: domain Description: argS Location: 47730-49428 bp Feature: domain Description: argS Location: 47730-4942 8 bp Feature: gene Location: 49693-49884 bp Feature: domain Description: hemeryth_dom Location: 49708-49816 bp Feature: domain Description: hemeryth_dom Location: 49708-49816 bp Feature: gene Location: 50427-51866 bp Feature: domain Description: RVT_N Location: 50496-50676 bp Feature: domain Description: RVT_N Location: 50496-50676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50772-51384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50772 -51384 bp Feature: domain Description: GIIM Note: maturase Location: 51489-51717 bp Feature: domain Description: GIIM Note: maturase Location: 51489-51717 bp Feature: gene Location: 51994-52293 bp Feature: domain Description: Hemerythrin Location: 52000-52192 bp Feature: domain Description: Hemerythrin Location: 52 000-52 192 bp Feature: gene Location: 52717-53490 bp Feature: domain Description: M48C_Oma1_like Location: 52912-53437 bp Feature: domain Description: M48C_Oma1_like Location: 52 912 -53437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argS (TIGR00456), hemeryth_dom (TIGR02481), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Hemerythrin (TIGR00058), M48C_Oma1_like (cd07342)

Seq: MCBY01000067.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_34_length_28833_cov_58.7985_ID_65, whole genome shotgun sequence (28833 bp)
Overview 1 RT 1: 19113-23131 bp Neighborhood of RT #1 [19113, 23202] MutS_I RVT-DGRs Polbeta Couple_hipA HipA_C Feature: gene Location: 19113-19256 bp Feature: gene Location: 19453-19770 bp Feature: domain Description: MutS_I Location: 19477-19738 bp Feature: domain Description: MutS_I Location: 19477-1973 8 bp Feature: gene Location: 20200-21096 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20308-20890 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203 08-20890 bp Feature: gene Location: 21339-21620 bp Feature: domain Description: Polbeta Location: 21369-21615 bp Feature: domain Description: Polbeta Location: 213 69-21615 bp Feature: gene Location: 22021-23202 bp Feature: domain Description: Couple_hipA Location: 22054-22345 bp Feature: domain Description: Couple_hipA Location: 22054-223 45 bp Feature: domain Description: HipA_C Location: 22471-23131 bp Feature: domain Description: HipA_C Location: 22471-23 13 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), RVT-DGRs, Polbeta (pfam18765), Couple_hipA (pfam13657), HipA_C (pfam07804)

Seq: MCBY01000031.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_40_length_20386_cov_108.322_ID_73, whole genome shotgun sequence (20386 bp)
Overview 1 RT 1: 5738-13198 bp Neighborhood of RT #1 [5738, 13263] PRK07207 PRK07209 RVT_N RVT-GII YkfC HNH_5 PRK07209 COG4637 Feature: gene Location: 5738-8437 bp Feature: domain Description: PRK07207 Location: 5747-8384 bp Feature: domain Description: PRK07207 Location: 574 7-8384 bp Feature: gene Location: 8468-8905 bp Feature: domain Description: PRK07209 Location: 8474-8903 bp Feature: domain Description: PRK07209 Location: 84 74 -8903 bp Feature: gene Location: 9524-11281 bp Feature: domain Description: RVT_N Location: 9584-9827 bp Feature: domain Description: RVT_N Location: 9584 -9827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-10550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-10550 bp Feature: domain Description: YkfC Location: 10562-10946 bp Feature: domain Description: YkfC Location: 10562-1094 6 bp Feature: domain Description: HNH_5 Location: 11063-11198 bp Feature: domain Description: HNH_5 Location: 11063-11198 bp Feature: gene Location: 11238-12095 bp Feature: domain Description: PRK07209 Location: 11391-12093 bp Feature: domain Description: PRK07209 Location: 11391-12093 bp Feature: gene Location: 12157-13263 bp Feature: domain Description: COG4637 Location: 12181-13198 bp Feature: domain Description: COG4 637 Location: 12181-13198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH_5 (pfam14279), COG4637 (Predicted ATPase )

Seq: MCBY01000033.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_44_length_15086_cov_83.4609_ID_113, whole genome shotgun sequence (15086 bp)
Overview 1 RT 1: 414-4245 bp 2 RT 2: 11684-15043 bp Neighborhood of RT #1 [414, 4245] DUF1566 RVT_N RVT_N RVT-GII HNH Neighborhood of RT #2 [11684, 15084] RVT_N RVT-GII GIIM McrA OM_YfiO Feature: gene Location: 414-1913 bp Feature: domain Description: DUF1566 Location: 1509-1902 bp Feature: domain Description: DUF15 66 Location: 15 09-1902 bp Feature: gene Location: 2499-2684 bp Feature: domain Description: RVT_N Location: 2556-2676 bp Feature: domain Description: RVT_N Location: 25 5 6-2676 bp Feature: gene Location: 2701-3129 bp Feature: domain Description: RVT_N Location: 2707-2797 bp Feature: domain Description: RVT_N Location: 2707-2797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845-3118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845 -3118 bp Feature: gene Location: 3482-3640 bp Feature: domain Description: HNH Note: nucleases Location: 3488-3578 bp Feature: domain Description: HNH Note: nucleases Location: 3488-35 78 bp Feature: gene Location: 3856-4245 bp Feature: gene Location: 11684-11812 bp Feature: gene Location: 11817-11951 bp Feature: gene Location: 12185-14056 bp Feature: domain Description: RVT_N Location: 12338-12599 bp Feature: domain Description: RVT_N Location: 12338-125 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12662-13310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12662-13310 bp Feature: domain Description: GIIM Note: maturase Location: 13412-13643 bp Feature: domain Description: GIIM Note: maturase Location: 13412-13643 bp Feature: domain Description: McrA Location: 13790-13997 bp Feature: domain Description: McrA Location: 13790-13997 bp Feature: gene Location: 14302-15084 bp Feature: domain Description: OM_YfiO Location: 14392-15043 bp Feature: domain Description: OM_YfiO Location: 14392-15 043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT_N (pfam13655), RVT-GII, HNH (pfam01844), GIIM (pfam08388), McrA (COG4058), OM_YfiO (TIGR03302)

Seq: MCBY01000070.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_7_length_111872_cov_103.287_ID_1117, whole genome shotgun sequence (111872 bp)
Overview 1 RT 1: 25982-30836 bp Neighborhood of RT #1 [25982, 30844] DUF3108 NlpB RVT_N RVT-GII GIIM HNH PRK03170 Feature: gene Location: 25982-26686 bp Feature: domain Description: DUF3108 Location: 26048-26666 bp Feature: domain Description: DUF3108 Location: 26 048-26 6 6 6 bp Feature: gene Location: 26728-27324 bp Feature: domain Description: NlpB Location: 26734-27301 bp Feature: domain Description: NlpB Location: 26 734-27301 bp Feature: gene Location: 27499-29289 bp Feature: domain Description: RVT_N Location: 27586-27832 bp Feature: domain Description: RVT_N Location: 27586 -27832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27895-28543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27895-28543 bp Feature: domain Description: GIIM Note: maturase Location: 28648-28876 bp Feature: domain Description: GIIM Note: maturase Location: 286 48-28876 bp Feature: domain Description: HNH Note: nucleases Location: 29104-29239 bp Feature: domain Description: HNH Note: nucleases Location: 29104-29239 bp Feature: gene Location: 29629-29757 bp Feature: gene Location: 29969-30844 bp Feature: domain Description: PRK03170 Location: 29972-30836 bp Feature: domain Description: PRK03170 Location: 29972-30836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3108 (pfam11306), NlpB (COG3317), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK03170 (dihydrodipicolinate synthase; Provisional)

Seq: MCBY01000006.1 Candidatus Marithrix sp. Canyon 246 clone 4 NODE_8_length_111910_cov_148.242_ID_1135, whole genome shotgun sequence (111910 bp)
Overview 1 RT 1: 46068-54009 bp Neighborhood of RT #1 [46068, 54047] PRK05749 PdxJ RVT_N RVT-GII YkfC HNH WD40 KOG0266 WD40 Peptidase_C14 Feature: gene Location: 46068-47288 bp Feature: domain Description: PRK05749 Location: 46071-47283 bp Feature: domain Description: PRK057 49 Location: 4607 1-47 283 bp Feature: gene Location: 47281-48000 bp Feature: domain Description: PdxJ Location: 47299-47992 bp Feature: domain Description: PdxJ Location: 47 299-47 992 bp Feature: gene Location: 48518-50308 bp Feature: domain Description: RVT_N Location: 48605-48851 bp Feature: domain Description: RVT_N Location: 48605-48851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48914-49562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48914-49562 bp Feature: domain Description: YkfC Location: 49631-49919 bp Feature: domain Description: YkfC Location: 49631-49919 bp Feature: domain Description: HNH Note: nucleases Location: 50123-50258 bp Feature: domain Description: HNH Note: nucleases Location: 50123-50258 bp Feature: gene Location: 50878-51162 bp Feature: gene Location: 51171-54047 bp Feature: domain Description: WD40 Location: 51243-51708 bp Feature: domain Description: WD40 Location: 51243-517 08 bp Feature: domain Description: KOG0266 Location: 51726-52224 bp Feature: domain Description: KOG0266 Location: 517 26-52224 bp Feature: domain Description: WD40 Location: 52557-52902 bp Feature: domain Description: WD40 Location: 52557 -52902 bp Feature: domain Description: Peptidase_C14 Location: 53349-54009 bp Feature: domain Description: Peptidase_C14 Location: 53349-54009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed), PdxJ (pfam03740), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), Peptidase_C14 (pfam00656)