myRT

myRT report for GCA_001723755.1_ASM172375v1

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Seq: MCCA01000124.1 Candidatus Marithrix sp. Canyon 246 clone 6 NODE_152_length_6239_cov_353.227_ID_899, whole genome shotgun sequence (6239 bp)
Overview 1 RT 1: 2-2629 bp Neighborhood of RT #1 [2, 2629] RVT-DGRs DUF1566 Feature: gene Location: 2-1177 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 197-887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 97-887 bp Feature: gene Location: 1268-2086 bp Feature: domain Description: DUF1566 Location: 1673-2075 bp Feature: domain Description: DUF1 566 Location: 1 673-2075 bp Feature: gene Location: 2237-2629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF1566 (pfam07603)

Seq: MCCA01000249.1 Candidatus Marithrix sp. Canyon 246 clone 6 NODE_63_length_14787_cov_423.988_ID_63, whole genome shotgun sequence (14787 bp)
Overview 1 RT 1: 205-7665 bp Neighborhood of RT #1 [205, 7730] PRK07207 PRK07209 RVT_N RVT-GII YkfC HNH_5 PRK07209 COG4637 Feature: gene Location: 205-2904 bp Feature: domain Description: PRK07207 Location: 214-2851 bp Feature: domain Description: PRK072 07 Location: 2 14-2 851 bp Feature: gene Location: 2935-3372 bp Feature: domain Description: PRK07209 Location: 2941-3370 bp Feature: domain Description: PRK072 09 Location: 2 941-3370 bp Feature: gene Location: 3991-5748 bp Feature: domain Description: RVT_N Location: 4051-4294 bp Feature: domain Description: RVT_N Location: 4051-42 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4345-5017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4345-5017 bp Feature: domain Description: YkfC Location: 5029-5413 bp Feature: domain Description: YkfC Location: 502 9-5413 bp Feature: domain Description: HNH_5 Location: 5530-5665 bp Feature: domain Description: HNH_5 Location: 5530-5665 bp Feature: gene Location: 5705-6562 bp Feature: domain Description: PRK07209 Location: 5858-6560 bp Feature: domain Description: PRK072 09 Location: 5858-6560 bp Feature: gene Location: 6624-7730 bp Feature: domain Description: COG4637 Location: 6648-7665 bp Feature: domain Description: COG4637 Location: 6648-7665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH_5 (pfam14279), COG4637 (Predicted ATPase )

Seq: MCCA01000079.1 Candidatus Marithrix sp. Canyon 246 clone 6 NODE_95_length_10706_cov_129.256_ID_6883, whole genome shotgun sequence (10706 bp)
Overview 1 RT 1: 1361-5450 bp Neighborhood of RT #1 [1361, 5450] Couple_hipA HipA_C Polbeta RVT-DGRs MutS_I Feature: gene Location: 1361-2542 bp Feature: domain Description: Couple_hipA Location: 1394-1685 bp Feature: domain Description: Couple_hipA Location: 13 94-1685 bp Feature: domain Description: HipA_C Location: 1811-2471 bp Feature: domain Description: HipA_C Location: 1811-2471 bp Feature: gene Location: 2943-3224 bp Feature: domain Description: Polbeta Location: 2973-3219 bp Feature: domain Description: Polbeta Location: 2973 -3 219 bp Feature: gene Location: 3467-4363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3575-4157 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 575-4157 bp Feature: gene Location: 4793-5110 bp Feature: domain Description: MutS_I Location: 4817-5078 bp Feature: domain Description: MutS_I Location: 4817-5078 bp Feature: gene Location: 5307-5450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), Polbeta (pfam18765), RVT-DGRs, MutS_I (pfam01624)

Seq: MCCA01000009.1 Candidatus Marithrix sp. Canyon 246 clone 6 NODE_9_length_30508_cov_324.487_ID_1021, whole genome shotgun sequence (30509 bp)
Overview 1 RT 1: 5664-10476 bp Neighborhood of RT #1 [5664, 10493] rluD OM_YfiO RVT-GII GIIM McrA RVT_N RVT-GII GEWL MORN MORN MORN MORN Feature: gene Location: 5664-6584 bp Feature: domain Description: rluD Location: 5676-6579 bp Feature: domain Description: rluD Location: 5676-6579 bp Feature: gene Location: 6609-7388 bp Feature: domain Description: OM_YfiO Location: 6627-7347 bp Feature: domain Description: OM_YfiO Location: 6627-734 7 bp Feature: gene Location: 7634-8422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7637-7772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7637-7772 bp Feature: domain Description: GIIM Note: maturase Location: 7877-8027 bp Feature: domain Description: GIIM Note: maturase Location: 7877-8027 bp Feature: domain Description: McrA Location: 8156-8363 bp Feature: domain Description: McrA Location: 8156-8363 bp Feature: gene Location: 8436-8930 bp Feature: domain Description: RVT_N Location: 8505-8730 bp Feature: domain Description: RVT_N Location: 8505-8730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8739-8901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8739-8901 bp Feature: gene Location: 9512-9901 bp Feature: domain Description: GEWL Location: 9647-9803 bp Feature: domain Description: GEWL Location: 964 7-9803 bp Feature: gene Location: 9915-10493 bp Feature: domain Description: MORN Location: 10134-10191 bp Feature: domain Description: MORN Location: 10134 -10191 bp Feature: domain Description: MORN Location: 10200-10227 bp Feature: domain Description: MORN Location: 10200-10227 bp Feature: domain Description: MORN Location: 10341-10407 bp Feature: domain Description: MORN Location: 1034 1-104 07 bp Feature: domain Description: MORN Location: 10410-10476 bp Feature: domain Description: MORN Location: 104 10-104 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rluD (PRK11180), OM_YfiO (TIGR03302), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), GEWL (cd01021), MORN (smart00698)