myRT

myRT report for GCA_001723765.1_ASM172376v1

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Seq: MAYW01000338.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000338, whole genome shotgun sequence (2735 bp)
Overview 1 RT 1: 1-2305 bp Neighborhood of RT #1 [1, 2388] RVT-GII GIIM Feature: gene Location: 1-162 bp Feature: gene Location: 1075-2388 bp Ori: ODS29902.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369-1993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 369-1 993 bp Feature: domain Description: GIIM Note: maturase Location: 2092-2305 bp Feature: domain Description: GIIM Note: maturase Location: 2092-2305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MAYW01000027.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000027, whole genome shotgun sequence (39235 bp)
Overview 1 RT 1: 22774-29837 bp Neighborhood of RT #1 [22774, 29857] Bac_DnaA_C RVT-DGRs PRK06545 PurS PurS PurL1 Feature: gene Location: 22774-23208 bp Feature: gene Location: 23363-23515 bp Ori: ODS33482.1 Feature: domain Description: Bac_DnaA_C Location: 23369-23486 bp Feature: domain Description: Bac_DnaA_C Location: 2 3369-2 3486 bp Feature: gene Location: 24514-25473 bp Ori: ODS33483.1 Gene: mutS Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24520-25138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 452 0-2 5138 bp Feature: gene Location: 25978-26853 bp Ori: ODS33484.1 Gene: pheA Feature: domain Description: PRK06545 Location: 25996-26839 bp Feature: domain Description: PRK06545 Location: 2 5996-2 6839 bp Feature: gene Location: 26825-29857 bp Ori: ODS33485.1 Feature: domain Description: PurS Location: 26837-27038 bp Feature: domain Description: PurS Location: 2 6837-2 7038 bp Feature: domain Description: PurS Location: 27128-27323 bp Feature: domain Description: PurS Location: 2 712 8-2 732 3 bp Feature: domain Description: PurL1 Location: 27392-29837 bp Feature: domain Description: PurL1 Location: 2 7392 -2 9837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_DnaA_C (smart00760), RVT-DGRs, PRK06545 (prephenate dehydrogenase; Validated), PurS (pfam02700), PurL1 (COG0046)

Seq: MAYW01000264.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000264, whole genome shotgun sequence (4463 bp)
Overview 1 RT 1: 1-1853 bp Neighborhood of RT #1 [1, 1888] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1-276 bp Feature: gene Location: 230-592 bp Ori: ODS30203.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 236-464 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 23 6-464 bp Feature: gene Location: 597-1595 bp Ori: ODS30204.1 Feature: domain Description: Cas1_I-II-III Location: 606-1560 bp Feature: domain Description: Cas1_I-II-III Location: 606-1560 bp Feature: gene Location: 1610-1888 bp Ori: ODS30205.1 Feature: domain Description: Cas2_I_II_III Location: 1622-1853 bp Feature: domain Description: Cas2_I_II_III Location: 1622-1853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: MAYW01000370.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000370, whole genome shotgun sequence (2274 bp)
Overview 1 RT 1: 860-1961 bp Neighborhood of RT #1 [860, 2011] RVT-GII GIIM Feature: gene Location: 860-2011 bp Ori: ODS29791.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1694 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1961 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MAYW01000160.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000160, whole genome shotgun sequence (9946 bp)
Overview 1 RT 1: 7181-9829 bp Neighborhood of RT #1 [7181, 9831] Csx1_III-U Csx1_III-U RVT-CRISPR Feature: gene Location: 7181-8365 bp Ori: ODS30933.1 Feature: domain Description: Csx1_III-U Location: 7235-8348 bp Feature: domain Description: Csx1_III-U Location: 7235 -8348 bp Feature: gene Location: 8540-9211 bp Ori: ODS30934.1 Feature: domain Description: Csx1_III-U Location: 8825-9200 bp Feature: domain Description: Csx1_III-U Location: 8825 -9200 bp Feature: gene Location: 9241-9831 bp Ori: ODS30935.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9445-9829 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9445 -9829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR

Seq: MAYW01000225.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000225, whole genome shotgun sequence (6108 bp)
Overview 1 RT 1: 282-5029 bp Neighborhood of RT #1 [282, 5029] RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII PEP-CTERM Feature: gene Location: 282-965 bp Ori: ODS30433.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 1-954 bp Feature: gene Location: 1048-1512 bp Feature: gene Location: 1534-3201 bp Ori: ODS30435.1 Gene: tnpR Feature: domain Description: Resolvase Location: 1546-1984 bp Feature: domain Description: Resolvase Location: 1546 -1984 bp Feature: domain Description: Recombinase Location: 2071-2434 bp Feature: domain Description: Recombinase Location: 2071-2434 bp Feature: domain Description: Zn_ribbon_recom Location: 2473-2662 bp Feature: domain Description: Zn_ribbon_recom Location: 2473-26 6 2 bp Feature: gene Location: 3191-3856 bp Ori: ODS30436.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3194-3485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3194-3485 bp Feature: gene Location: 4024-4917 bp Ori: ODS30437.1 Feature: domain Description: PEP-CTERM Location: 4771-4846 bp Feature: domain Description: PEP-CTERM Location: 4771-4846 bp Feature: gene Location: 4931-5029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PEP-CTERM

Seq: MAYW01000376.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000376, whole genome shotgun sequence (2211 bp)
Overview 1 RT 1: 2-1942 bp Neighborhood of RT #1 [2, 2016] RVT-GII RVT-GII GIIM Feature: gene Location: 2-250 bp Ori: ODS29778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-212 bp Feature: gene Location: 769-2016 bp Ori: ODS29779.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97 3-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1711-1942 bp Feature: domain Description: GIIM Note: maturase Location: 17 11-1942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MAYW01000273.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000273, whole genome shotgun sequence (4206 bp)
Overview 1 RT 1: 1-3557 bp Neighborhood of RT #1 [1, 3661] NADPH_oxidoreductase_2 COG3666 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 1-147 bp Ori: ODS30155.1 Gene: ndh_2 Feature: domain Description: NADPH_oxidoreductase_2 Location: 7-148 bp Feature: domain Description: NADPH_oxidoreductase_2 Location: 7-148 bp Feature: gene Location: 439-1866 bp Ori: ODS30156.1 Feature: domain Description: COG3666 Location: 460-886 bp Feature: domain Description: COG3666 Location: 460-8 8 6 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1462-1822 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1462-18 22 bp Feature: gene Location: 2177-3661 bp Ori: ODS30157.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2624-3269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2624-3269 bp Feature: domain Description: GIIM Note: maturase Location: 3341-3557 bp Feature: domain Description: GIIM Note: maturase Location: 3341-3557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NADPH_oxidoreductase_2, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)

Seq: MAYW01000190.1 Candidatus Scalindua rubra isolate BSI-1 SCARUB_contig000190, whole genome shotgun sequence (8102 bp)
Overview 1 RT 1: 1891-5464 bp Neighborhood of RT #1 [1891, 5475] DUF2281 RVT-GII RAYT PIN_VapC4-5_FitB-like Feature: gene Location: 1891-2136 bp Ori: ODS30668.1 Feature: domain Description: DUF2281 Location: 1924-2023 bp Feature: domain Description: DUF2281 Location: 19 24-2023 bp Feature: gene Location: 2413-2523 bp Feature: gene Location: 2702-4018 bp Ori: ODS30670.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2984-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29 84-3662 bp Feature: gene Location: 4400-4798 bp Ori: ODS30671.1 Gene: tnpA_1 Feature: domain Description: RAYT Location: 4499-4727 bp Feature: domain Description: RAYT Location: 449 9 -4727 bp Feature: gene Location: 5074-5475 bp Ori: ODS30672.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5086-5464 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 5086-5464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2281 (pfam10047), RVT-GII, RAYT (COG1943), PIN_VapC4-5_FitB-like (cd18754)