myRT

myRT report for GCA_001724645.1_ASM172464v1

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Seq: MEFA01000067.1 Pseudonocardia sp. SCN 72-86 ABS81_C0067, whole genome shotgun sequence (28728 bp)
Overview 1 RT 1: 9003-12997 bp Neighborhood of RT #1 [9003, 13044] WcaG RVT-Retrons SGNH_hydrolase_yrhL_like HAD_ScGPP-like Feature: gene Location: 9003-10010 bp Feature: domain Description: WcaG Location: 9012-9948 bp Feature: domain Description: WcaG Location: 901 2-9948 bp Feature: gene Location: 10050-10430 bp Feature: gene Location: 10568-11620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10778-11390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0778-1 1 390 bp Feature: gene Location: 11624-12346 bp Feature: domain Description: SGNH_hydrolase_yrhL_like Location: 11888-12332 bp Feature: domain Description: SGNH_hydrolase_yrhL_like Location: 1 1 888-1 2332 bp Feature: gene Location: 12439-13044 bp Feature: domain Description: HAD_ScGPP-like Location: 12442-12997 bp Feature: domain Description: HAD_ScGPP-like Location: 1 2442-1 2997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SGNH_hydrolase_yrhL_like (cd01840), HAD_ScGPP-like (cd07527), WcaG (COG0451)

Seq: MEFA01000014.1 Pseudonocardia sp. SCN 72-86 ABS81_C0014, whole genome shotgun sequence (41338 bp)
Overview 1 RT 1: 2660-7821 bp Neighborhood of RT #1 [2660, 8662] AcrR HTH_21 RVT-GII GIIM CAD Feature: gene Location: 2660-3331 bp Feature: domain Description: AcrR Location: 2717-3287 bp Feature: domain Description: AcrR Location: 2 717-32 87 bp Feature: gene Location: 4460-4852 bp Feature: domain Description: HTH_21 Location: 4592-4733 bp Feature: domain Description: HTH_2 1 Location: 4592 -4733 bp Feature: gene Location: 5477-6925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5792-6479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5792 -6479 bp Feature: domain Description: GIIM Note: maturase Location: 6554-6752 bp Feature: domain Description: GIIM Note: maturase Location: 6554-6752 bp Feature: gene Location: 7366-7644 bp Feature: gene Location: 7653-8662 bp Feature: domain Description: CAD Location: 7680-7821 bp Feature: domain Description: CAD Location: 7680-782 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), CAD (smart00266)