myRT

myRT report for GCA_001725945.1_ASM172594v1

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Seq: LRMT01000212.1 Cupriavidus sp. UYMMa02A contig.29, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 79-1237 bp Neighborhood of RT #1 [79, 1326] RVT-GII GIIM Feature: gene Location: 79-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-943 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1 024-1 237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRMT01000027.1 Cupriavidus sp. UYMMa02A contig.122, whole genome shotgun sequence (99455 bp)
Overview 1 RT 1: 60038-65301 bp Neighborhood of RT #1 [60038, 65623] RpmB PRK00024 RVT_N RVT-GII GIIM HNHc SlpA ispH Feature: gene Location: 60038-60271 bp Ori: ODV44076.1 Gene: rpmB Feature: domain Description: RpmB Location: 60041-60263 bp Feature: domain Description: RpmB Location: 60041-602 63 bp Feature: gene Location: 60459-61145 bp Ori: ODV44077.1 Feature: domain Description: PRK00024 Location: 60462-61128 bp Feature: domain Description: PRK0002 4 Location: 60462 -6112 8 bp Feature: gene Location: 62320-64023 bp Ori: ODV44078.1 Feature: domain Description: RVT_N Location: 62377-62620 bp Feature: domain Description: RVT_N Location: 62 377-62 62 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62665-63313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 665-63313 bp Feature: domain Description: GIIM Note: maturase Location: 63364-63598 bp Feature: domain Description: GIIM Note: maturase Location: 63364-63598 bp Feature: domain Description: HNHc Note: nucleases Location: 63820-63982 bp Feature: domain Description: HNHc Note: nucleases Location: 6382 0-63982 bp Feature: gene Location: 64133-64621 bp Ori: ODV44079.1 Feature: domain Description: SlpA Location: 64190-64616 bp Feature: domain Description: SlpA Location: 64190-64616 bp Feature: gene Location: 64650-65623 bp Gene: ispH Feature: domain Description: ispH Location: 64683-65301 bp Feature: domain Description: ispH Location: 64683-65301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SlpA (COG1047), ispH (PRK01045)

Seq: LRMT01000004.1 Cupriavidus sp. UYMMa02A contig.101, whole genome shotgun sequence (73299 bp)
Overview 1 RT 1: 53266-59137 bp Neighborhood of RT #1 [53266, 59364] Abhydrolase_6 Dyp_perox_fam RVT-CRISPR-like GIIM ACCS ACCS Feature: gene Location: 53266-53964 bp Ori: ODV44504.1 Feature: domain Description: Abhydrolase_6 Location: 53287-53926 bp Feature: domain Description: Abhydrolase_6 Location: 53 287-53 926 bp Feature: gene Location: 54103-54997 bp Feature: domain Description: Dyp_perox_fam Location: 54121-54949 bp Feature: domain Description: Dyp_perox_fam Location: 54121-54949 bp Feature: gene Location: 55379-55756 bp Ori: ODV44495.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 55382-55598 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 553 82-55598 bp Feature: domain Description: GIIM Note: maturase Location: 55658-55751 bp Feature: domain Description: GIIM Note: maturase Location: 55658-55751 bp Feature: gene Location: 56100-56961 bp Feature: gene Location: 57274-59364 bp Feature: domain Description: ACCS Location: 57292-57580 bp Feature: domain Description: ACCS Location: 57292-57580 bp Feature: domain Description: ACCS Location: 58183-59137 bp Feature: domain Description: ACCS Location: 58183 -5913 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abhydrolase_6 (pfam12697), Dyp_perox_fam (TIGR01413), RVT-CRISPR, GIIM (pfam08388), ACCS (COG1042)

Seq: LRMT01000282.1 Cupriavidus sp. UYMMa02A contig.76, whole genome shotgun sequence (36549 bp)
Overview 1 RT 1: 16838-20383 bp Neighborhood of RT #1 [16838, 20472] ring_hydroxylating_dioxygenases_beta Rieske_RO_Alpha_S5H RHO_alpha_C_ahdA1c-like RVT-GII GIIM Feature: gene Location: 16838-17306 bp Feature: domain Description: ring_hydroxylating_dioxygenases_beta Location: 16865-17120 bp Feature: domain Description: ring_hydroxylating_dioxygenases_beta Location: 16865-17120 bp Feature: gene Location: 17311-18564 bp Ori: ODV40798.1 Feature: domain Description: Rieske_RO_Alpha_S5H Location: 17443-17824 bp Feature: domain Description: Rieske_RO_Alpha_S5H Location: 174 4 3-17824 bp Feature: domain Description: RHO_alpha_C_ahdA1c-like Location: 17899-18559 bp Feature: domain Description: RHO_alpha_C_ahdA1c-like Location: 17899-18559 bp Feature: gene Location: 19225-20472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19429-20089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 29-20089 bp Feature: domain Description: GIIM Note: maturase Location: 20170-20383 bp Feature: domain Description: GIIM Note: maturase Location: 20170-20383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ring_hydroxylating_dioxygenases_beta (cd00667), Rieske_RO_Alpha_S5H (cd03539), RHO_alpha_C_ahdA1c-like (cd08880), RVT-GII, GIIM (pfam08388)

Seq: LRMT01000034.1 Cupriavidus sp. UYMMa02A contig.129, whole genome shotgun sequence (227488 bp)
Overview 1 RT 1: 112-6119 bp Neighborhood of RT #1 [112, 6133] AdoHcyase RVT_N RVT-GII GIIM HNHc ThiD PGDYG Feature: gene Location: 112-1529 bp Feature: domain Description: AdoHcyase Location: 142-337 bp Feature: domain Description: AdoHcyase Location: 142-337 bp Feature: gene Location: 1822-3534 bp Ori: ODV43827.1 Feature: domain Description: RVT_N Location: 1882-2125 bp Feature: domain Description: RVT_N Location: 1882-2125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170-2818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170-2818 bp Feature: domain Description: GIIM Note: maturase Location: 2872-3103 bp Feature: domain Description: GIIM Note: maturase Location: 2872-3103 bp Feature: domain Description: HNHc Note: nucleases Location: 3331-3487 bp Feature: domain Description: HNHc Note: nucleases Location: 3331-3487 bp Feature: gene Location: 4852-5687 bp Feature: domain Description: ThiD Location: 4867-5590 bp Feature: domain Description: ThiD Location: 4867-5 5 90 bp Feature: gene Location: 5699-6133 bp Ori: ODV43828.1 Feature: domain Description: PGDYG Location: 5819-6119 bp Feature: domain Description: PGDYG Location: 5 819-6119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoHcyase (smart00996), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ThiD (COG0351), PGDYG (pfam14083)