myRT

myRT report for GCA_001726405.1_ASM172640v1

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Seq: MIQU01000011.1 Vibrio parahaemolyticus strain GCSL_R30 CFSAN011108_contig0010, whole genome shotgun sequence (375332 bp)
Overview 1 RT 1: 190810-194606 bp Neighborhood of RT #1 [190810, 194606] AlpA RVT-Retrons Feature: gene Location: 190810-191004 bp Ori: ODW71229.1 Feature: domain Description: AlpA Location: 190819-190975 bp Feature: domain Description: AlpA Location: 1 9081 9-1 90975 bp Feature: gene Location: 191150-191902 bp Feature: gene Location: 191948-192913 bp Ori: ODW71231.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192053-192635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 92053-1 92635 bp Feature: gene Location: 192915-193919 bp Feature: gene Location: 194292-194606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-Retrons

Seq: MIQU01000127.1 Vibrio parahaemolyticus strain GCSL_R30 CFSAN011108_contig0126, whole genome shotgun sequence (356979 bp)
Overview 1 RT 1: 23339-34143 bp Neighborhood of RT #1 [23339, 34143] HTH_XRE RVT-Retrons RVT-UG1 Feature: gene Location: 23339-23518 bp Feature: gene Location: 23570-23854 bp Ori: ODW58714.1 Feature: domain Description: HTH_XRE Location: 23582-23747 bp Feature: domain Description: HTH_XRE Location: 2 3582 -2 3747 bp Feature: gene Location: 23851-24795 bp Ori: ODW58715.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23986-24559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3986-2 4559 bp Feature: gene Location: 25048-25692 bp Feature: gene Location: 25904-27076 bp Feature: gene Location: 28531-28815 bp Feature: gene Location: 28812-29000 bp Feature: gene Location: 29374-33219 bp Ori: ODW58720.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 30016-30535 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 30016-30535 bp Feature: gene Location: 33216-33719 bp Feature: gene Location: 33940-34143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, RVT-UG1

Seq: MIQU01000034.1 Vibrio parahaemolyticus strain GCSL_R30 CFSAN011108_contig0033, whole genome shotgun sequence (508370 bp)
Overview 1 RT 1: 327170-332693 bp Neighborhood of RT #1 [327170, 332830] RVT-Retrons SLATT_5 SIR2_2 Feature: gene Location: 327170-327700 bp Feature: gene Location: 328615-329505 bp Feature: gene Location: 329674-330633 bp Ori: ODW68627.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 329827-330382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 29827-3 3 03 82 bp Feature: gene Location: 331027-331593 bp Ori: ODW68628.1 Feature: domain Description: SLATT_5 Location: 331138-331417 bp Feature: domain Description: SLATT_5 Location: 3 3 113 8-3 3 1417 bp Feature: gene Location: 331640-332830 bp Ori: ODW68629.1 Feature: domain Description: SIR2_2 Location: 332054-332693 bp Feature: domain Description: SIR2_2 Location: 3 3 2054-3 3 2693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SLATT_5 (pfam18160), SIR2_2 (pfam13289)