myRT

myRT report for GCA_001726415.1_ASM172641v1

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Seq: MIQV01000027.1 Vibrio parahaemolyticus strain GCSL_R31 CFSAN011109_contig0026, whole genome shotgun sequence (356979 bp)
Overview 1 RT 1: 322837-333641 bp Neighborhood of RT #1 [322837, 333641] RVT-UG1 RVT-Retrons HTH_XRE Feature: gene Location: 322837-323040 bp Feature: gene Location: 323261-323764 bp Feature: gene Location: 323761-327606 bp Ori: ODW72213.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 324403-324922 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 324403-324922 bp Feature: gene Location: 327980-328168 bp Feature: gene Location: 328165-328449 bp Feature: gene Location: 329904-331076 bp Feature: gene Location: 331288-331932 bp Feature: gene Location: 332185-333129 bp Ori: ODW72218.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 332320-332893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 332320-332893 bp Feature: gene Location: 333126-333410 bp Ori: ODW72219.1 Feature: domain Description: HTH_XRE Location: 333138-333303 bp Feature: domain Description: HTH_XRE Location: 3331 38-333303 bp Feature: gene Location: 333462-333641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, RVT-Retrons, HTH_XRE (smart00530)

Seq: MIQV01000034.1 Vibrio parahaemolyticus strain GCSL_R31 CFSAN011109_contig0033, whole genome shotgun sequence (370364 bp)
Overview 1 RT 1: 189164-194687 bp Neighborhood of RT #1 [189164, 194824] RVT-Retrons SLATT_5 SIR2_2 Feature: gene Location: 189164-189694 bp Feature: gene Location: 190609-191499 bp Feature: gene Location: 191668-192627 bp Ori: ODW70710.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191821-192376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19182 1-192 376 bp Feature: gene Location: 193021-193587 bp Ori: ODW70711.1 Feature: domain Description: SLATT_5 Location: 193132-193411 bp Feature: domain Description: SLATT_5 Location: 193132 -193411 bp Feature: gene Location: 193634-194824 bp Ori: ODW70712.1 Feature: domain Description: SIR2_2 Location: 194048-194687 bp Feature: domain Description: SIR2 _2 Location: 194048-194687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SLATT_5 (pfam18160), SIR2_2 (pfam13289)

Seq: MIQV01000104.1 Vibrio parahaemolyticus strain GCSL_R31 CFSAN011109_contig0103, whole genome shotgun sequence (375341 bp)
Overview 1 RT 1: 190819-194615 bp Neighborhood of RT #1 [190819, 194615] AlpA RVT-Retrons Feature: gene Location: 190819-191013 bp Ori: ODW64312.1 Feature: domain Description: AlpA Location: 190828-190984 bp Feature: domain Description: AlpA Location: 190828-190984 bp Feature: gene Location: 191159-191911 bp Feature: gene Location: 191957-192922 bp Ori: ODW64314.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192062-192644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192062-192644 bp Feature: gene Location: 192924-193928 bp Feature: gene Location: 194292-194615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-Retrons