myRT

myRT report for GCA_001726645.1_ASM172664v1

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Seq: MIRH01000013.1 Vibrio parahaemolyticus strain GCSL_R57 CFSAN011121_contig0012, whole genome shotgun sequence (4924 bp)
Overview 1 RT 1: 4-2386 bp Neighborhood of RT #1 [4, 3156] DUF3265 RVT-UG11 DUF4365 Exonuc_VII_S Feature: gene Location: 4-93 bp Ori: ODX26616.1 Feature: domain Description: DUF3265 Location: 10-91 bp Feature: domain Description: DUF3265 Location: 1 0-91 bp Feature: gene Location: 101-877 bp Ori: ODX26613.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 233-689 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 233-689 bp Feature: gene Location: 1544-1999 bp Ori: ODX26617.1 Feature: domain Description: DUF4365 Location: 1577-1973 bp Feature: domain Description: DUF4365 Location: 1 577-1 973 bp Feature: gene Location: 1996-3156 bp Ori: ODX26614.1 Feature: domain Description: Exonuc_VII_S Location: 2269-2386 bp Feature: domain Description: Exonuc_VII_S Location: 2269-2386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3265 (pfam11665), RVT-UG11, DUF4365 (pfam14280), Exonuc_VII_S (pfam02609)

Seq: MIRH01000066.1 Vibrio parahaemolyticus strain GCSL_R57 CFSAN011121_contig0065, whole genome shotgun sequence (485179 bp)
Overview 1 RT 1: 4790-11790 bp Neighborhood of RT #1 [4790, 12002] AAA_15 AAA_15 RVT-Retrons AAA_13 DUF3800 Feature: gene Location: 4790-6907 bp Ori: ODX18748.1 Feature: domain Description: AAA_15 Location: 4793-5210 bp Feature: domain Description: AAA_15 Location: 4793-52 10 bp Feature: domain Description: AAA_15 Location: 5345-5774 bp Feature: domain Description: AAA_15 Location: 5345-5774 bp Feature: gene Location: 7083-8183 bp Ori: ODX18749.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7224-7782 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72 2 4-7782 bp Feature: gene Location: 8521-10734 bp Ori: ODX18750.1 Feature: domain Description: AAA_13 Location: 8551-10633 bp Feature: domain Description: AAA_13 Location: 8551-10633 bp Feature: gene Location: 11211-12002 bp Ori: ODX18751.1 Feature: domain Description: DUF3800 Location: 11247-11790 bp Feature: domain Description: DUF3800 Location: 112 47-11790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, AAA_13 (pfam13166), DUF3800 (pfam12686)

Seq: MIRH01000079.1 Vibrio parahaemolyticus strain GCSL_R57 CFSAN011121_contig0078, whole genome shotgun sequence (523015 bp)
Overview 1 RT 1: 182393-187430 bp Neighborhood of RT #1 [182393, 188170] COG5545 AlpA RVT-Retrons AAA_15 Feature: gene Location: 182393-183661 bp Ori: ODX17175.1 Feature: domain Description: COG5545 Location: 182672-183440 bp Feature: domain Description: COG5545 Location: 182672-183 440 bp Feature: gene Location: 183645-183845 bp Ori: ODX17176.1 Feature: domain Description: AlpA Location: 183651-183819 bp Feature: domain Description: AlpA Location: 183 651-183 819 bp Feature: gene Location: 184184-185143 bp Ori: ODX17177.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 184334-184892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1843 3 4-184892 bp Feature: gene Location: 185298-186203 bp Feature: gene Location: 186326-188170 bp Ori: ODX17179.1 Feature: domain Description: AAA_15 Location: 186329-187430 bp Feature: domain Description: AAA_15 Location: 1863 29-18743 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5545 (Predicted P-loop ATPase and inactivated derivatives ), AlpA (COG3311), RVT-Retrons, AAA_15 (pfam13175)