myRT

myRT report for GCA_001726695.1_ASM172669v1

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Seq: MIRJ01000028.1 Vibrio parahaemolyticus strain GCSL_R60 CFSAN011123_contig0027, whole genome shotgun sequence (641230 bp)
Overview 1 RT 1: 530255-536919 bp Neighborhood of RT #1 [530255, 537005] RVT_N RVT-GII GIIM DUF2955 EmrA Feature: gene Location: 530255-530845 bp Feature: gene Location: 530823-532316 bp Feature: gene Location: 532746-534377 bp Feature: RT Description: RVT_N Location: 532953-533196 bp Feature: RT Description: RVT_N Location: 532953-5331 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533241-533868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533241 -533868 bp Feature: domain Description: GIIM Note: maturase Location: 533928-534153 bp Feature: domain Description: GIIM Note: maturase Location: 533928-5341 53 bp Feature: gene Location: 534917-535909 bp Feature: domain Description: DUF2955 Location: 534944-535361 bp Feature: domain Description: DUF2955 Location: 534944-535361 bp Feature: gene Location: 535899-537005 bp Feature: domain Description: EmrA Location: 535938-536919 bp Feature: domain Description: EmrA Location: 535938-53691 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2955 (pfam11168), EmrA (COG1566)

Seq: MIRJ01000100.1 Vibrio parahaemolyticus strain GCSL_R60 CFSAN011123_contig0099, whole genome shotgun sequence (256849 bp)
Overview 1 RT 1: 120943-126753 bp Neighborhood of RT #1 [120943, 126753] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons PRK09726 Feature: gene Location: 120943-121743 bp Feature: domain Description: Hypoth_Ymh Location: 121363-121723 bp Feature: domain Description: Hypoth_Ymh Location: 12 1363-12 172 3 bp Feature: gene Location: 121891-124008 bp Feature: domain Description: AAA_15 Location: 121894-122311 bp Feature: domain Description: AAA_15 Location: 12 1894-12 2 311 bp Feature: domain Description: AAA_15 Location: 122446-122875 bp Feature: domain Description: AAA_15 Location: 12 2 446-12 2 875 bp Feature: gene Location: 124184-125284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 124328-124883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 432 8-12 4883 bp Feature: gene Location: 125623-125880 bp Feature: domain Description: PRK09726 Location: 125632-125839 bp Feature: domain Description: PRK0972 6 Location: 12 5632 -12 5839 bp Feature: gene Location: 125977-126753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), AAA_15 (pfam13175), RVT-Retrons, PRK09726 (type II toxin-antitoxin system antitoxin HipB)