myRT

myRT report for GCA_001727115.1_ASM172711v1

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Seq: MISE01000096.1 Vibrio parahaemolyticus strain GCSL_R129 CFSAN011149_contig0096, whole genome shotgun sequence (204864 bp)
Overview 1 RT 1: 114093-119651 bp Neighborhood of RT #1 [114093, 119651] COG5340 RVT-UG5 COG4190 Feature: gene Location: 114093-114638 bp Ori: ODY20826.1 Feature: domain Description: COG5340 Location: 114225-114513 bp Feature: domain Description: COG5340 Location: 1 1 4225-1 1 451 3 bp Feature: gene Location: 114812-115195 bp Feature: gene Location: 115288-118290 bp Ori: ODY20827.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 115825-116311 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 5825-1 1 631 1 bp Feature: gene Location: 118892-119278 bp Ori: ODY20828.1 Feature: domain Description: COG4190 Location: 118907-119234 bp Feature: domain Description: COG41 90 Location: 1 1 8907-1 1 9234 bp Feature: gene Location: 119361-119651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-UG5, COG4190 (Predicted transcriptional regulator )

Seq: MISE01000062.1 Vibrio parahaemolyticus strain GCSL_R129 CFSAN011149_contig0061, whole genome shotgun sequence (305109 bp)
Overview 1 RT 1: 181656-186655 bp Neighborhood of RT #1 [181656, 186768] COG5545 AlpA RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 181656-182924 bp Ori: ODY24196.1 Feature: domain Description: COG5545 Location: 181935-182706 bp Feature: domain Description: COG5545 Location: 181935-182 706 bp Feature: gene Location: 182908-183108 bp Ori: ODY24197.1 Feature: domain Description: AlpA Location: 182914-183082 bp Feature: domain Description: AlpA Location: 182 914-183082 bp Feature: gene Location: 183579-184526 bp Ori: ODY24198.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183693-184290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183693-1842 90 bp Feature: gene Location: 184532-186160 bp Ori: ODY24199.1 Feature: domain Description: COG3950 Location: 184718-186143 bp Feature: domain Description: COG3950 Location: 184718-186143 bp Feature: gene Location: 186157-186768 bp Ori: ODY24200.1 Feature: domain Description: TIGR02646 Location: 186262-186655 bp Feature: domain Description: TIGR02 646 Location: 1862 62 -186655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5545 (Predicted P-loop ATPase and inactivated derivatives ), AlpA (COG3311), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)