myRT

myRT report for GCA_001727415.1_ASM172741v1

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Seq: MIUG01000075.1 Vibrio parahaemolyticus strain CDC_K5323W CFSAN011207_contig0074, whole genome shotgun sequence (291642 bp)
Overview 1 RT 1: 68331-71539 bp Neighborhood of RT #1 [68331, 71580] RVT-GII GIIM InsQ Feature: gene Location: 68331-68609 bp Feature: gene Location: 68669-68935 bp Feature: gene Location: 69558-70439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69573-69921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69573-69921 bp Feature: domain Description: GIIM Note: maturase Location: 70002-70194 bp Feature: domain Description: GIIM Note: maturase Location: 70002-701 94 bp Feature: gene Location: 70748-70990 bp Feature: gene Location: 71119-71580 bp Feature: domain Description: InsQ Location: 71149-71539 bp Feature: domain Description: InsQ Location: 71 1 49-71 539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: MIUG01000054.1 Vibrio parahaemolyticus strain CDC_K5323W CFSAN011207_contig0053, whole genome shotgun sequence (560549 bp)
Overview 1 RT 1: 173504-179932 bp Neighborhood of RT #1 [173504, 179970] dnaG PRK05658 RVT-Retrons HTH_XRE COG4190 Feature: gene Location: 173504-175264 bp Ori: OEA65276.1 Feature: domain Description: dnaG Location: 173513-175229 bp Feature: domain Description: dnaG Location: 173513-1752 2 9 bp Feature: gene Location: 175364-177226 bp Ori: OEA65277.1 Feature: domain Description: PRK05658 Location: 175370-177224 bp Feature: domain Description: PRK05658 Location: 175370-1772 2 4 bp Feature: gene Location: 177766-178725 bp Ori: OEA65278.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177940-178495 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177940-178495 bp Feature: gene Location: 178706-179011 bp Ori: OEA65279.1 Feature: domain Description: HTH_XRE Location: 178721-178883 bp Feature: domain Description: HTH_XRE Location: 17872 1-178883 bp Feature: gene Location: 179590-179970 bp Ori: OEA65280.1 Feature: domain Description: COG4190 Location: 179605-179932 bp Feature: domain Description: COG4190 Location: 179605-179932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), PRK05658 (RNA polymerase sigma factor RpoD; Validated), RVT-Retrons, HTH_XRE (smart00530), COG4190 (Predicted transcriptional regulator )