myRT

myRT report for GCA_001727475.1_ASM172747v1

Download annotations/find similar RTs

Seq: MIUF01000056.1 Vibrio parahaemolyticus strain CDC_K5323G CFSAN011206_contig0055, whole genome shotgun sequence (613732 bp)
Overview 1 RT 1: 220063-223312 bp Neighborhood of RT #1 [220063, 223312] InsQ RVT-GII GIIM Feature: gene Location: 220063-220524 bp Feature: domain Description: InsQ Location: 220093-220483 bp Feature: domain Description: InsQ Location: 220093-220483 bp Feature: gene Location: 220653-220895 bp Feature: gene Location: 221204-222085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221219-221567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 21 9-221 567 bp Feature: domain Description: GIIM Note: maturase Location: 221648-221840 bp Feature: domain Description: GIIM Note: maturase Location: 221 648-221 840 bp Feature: gene Location: 222708-222974 bp Feature: gene Location: 223034-223312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388)

Seq: MIUF01000075.1 Vibrio parahaemolyticus strain CDC_K5323G CFSAN011206_contig0074, whole genome shotgun sequence (184016 bp)
Overview 1 RT 1: 173553-179981 bp Neighborhood of RT #1 [173553, 180019] dnaG PRK05658 RVT-Retrons HTH_XRE COG4190 Feature: gene Location: 173553-175313 bp Ori: OEA53173.1 Feature: domain Description: dnaG Location: 173562-175278 bp Feature: domain Description: dnaG Location: 173562 -1752 78 bp Feature: gene Location: 175413-177275 bp Ori: OEA53174.1 Feature: domain Description: PRK05658 Location: 175419-177273 bp Feature: domain Description: PRK05658 Location: 175419-1772 73 bp Feature: gene Location: 177815-178774 bp Ori: OEA53175.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177989-178544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177989-178544 bp Feature: gene Location: 178755-179060 bp Ori: OEA53176.1 Feature: domain Description: HTH_XRE Location: 178770-178932 bp Feature: domain Description: HTH_XRE Location: 178770-178932 bp Feature: gene Location: 179639-180019 bp Ori: OEA53177.1 Feature: domain Description: COG4190 Location: 179654-179981 bp Feature: domain Description: COG4190 Location: 179654-179981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), PRK05658 (RNA polymerase sigma factor RpoD; Validated), RVT-Retrons, HTH_XRE (smart00530), COG4190 (Predicted transcriptional regulator )