myRT

myRT report for GCA_001727975.1_ASM172797v1

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Seq: MITD01000028.1 Vibrio parahaemolyticus strain CDC_K4764D CFSAN011177_contig0027, whole genome shotgun sequence (660531 bp)
Overview 1 RT 1: 314065-320935 bp Neighborhood of RT #1 [314065, 320952] PinE RVT-Retrons Tar PRK15030 Feature: gene Location: 314065-314673 bp Feature: domain Description: PinE Location: 314077-314650 bp Feature: domain Description: PinE Location: 31 4077-31 4650 bp Feature: gene Location: 314906-315625 bp Feature: gene Location: 315635-316837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 315779-316364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 5779-31 6364 bp Feature: gene Location: 317751-319388 bp Feature: domain Description: Tar Location: 318207-319386 bp Feature: domain Description: Tar Location: 31 8207-31 9386 bp Feature: gene Location: 319813-320952 bp Feature: domain Description: PRK15030 Location: 319834-320935 bp Feature: domain Description: PRK1 5030 Location: 31 9834-320935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons, Tar (COG0840), PRK15030 (multidrug efflux RND transporter periplasmic adaptor subunit AcrA)

Seq: MITD01000073.1 Vibrio parahaemolyticus strain CDC_K4764D CFSAN011177_contig0072, whole genome shotgun sequence (26361 bp)
Overview 1 RT 1: 22086-26106 bp Neighborhood of RT #1 [22086, 26116] YjbI PRK08310 RVT_N RVT-GII RVT_1 Feature: gene Location: 22086-22751 bp Feature: domain Description: YjbI Location: 22110-22677 bp Feature: domain Description: YjbI Location: 2 2 110-2 2 677 bp Feature: gene Location: 22825-24030 bp Feature: domain Description: PRK08310 Location: 22876-24016 bp Feature: domain Description: PRK08310 Location: 2 2 876-2 4016 bp Feature: gene Location: 24624-26116 bp Feature: RT Description: RVT_N Location: 24672-24912 bp Feature: RT Description: RVT_N Location: 2 4672 -2 4912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24960-25587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4960-2 5587 bp Feature: RT Description: RVT_1 Location: 25956-26106 bp Feature: RT Description: RVT_1 Location: 2 5956-2 6106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbI (COG2346), PRK08310 (amidase; Provisional), RVT_N (pfam13655), RVT-GII, RVT_1 (pfam00078)

Seq: MITD01000003.1 Vibrio parahaemolyticus strain CDC_K4764D CFSAN011177_contig0002, whole genome shotgun sequence (5329 bp)
Overview 1 RT 1: 165-4426 bp Neighborhood of RT #1 [165, 4650] RVT_N RVT-GII GIIM Feature: gene Location: 165-641 bp Feature: gene Location: 2483-2882 bp Feature: gene Location: 3178-4650 bp Feature: RT Description: RVT_N Location: 3226-3469 bp Feature: RT Description: RVT_N Location: 3 226-3 469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3514-4141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 514-4141 bp Feature: domain Description: GIIM Note: maturase Location: 4207-4426 bp Feature: domain Description: GIIM Note: maturase Location: 4207-4426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)