myRT

myRT report for GCA_001728275.1_ASM172827v1

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Seq: MITT01000004.1 Vibrio parahaemolyticus strain CDC_K5073 CFSAN011194_contig0003, whole genome shotgun sequence (509959 bp)
Overview 1 RT 1: 178182-183352 bp Neighborhood of RT #1 [178182, 183360] couple_hipB HipA_So_like RVT-Retrons Mrr_cat zf-C4_Topoisom Feature: gene Location: 178182-178517 bp Ori: OEA09734.1 Feature: domain Description: couple_hipB Location: 178251-178419 bp Feature: domain Description: couple_hipB Location: 1 78251 -1 7841 9 bp Feature: gene Location: 178510-179916 bp Ori: OEA09735.1 Feature: domain Description: HipA_So_like Location: 178591-179872 bp Feature: domain Description: HipA_So_like Location: 1 78591 -1 79872 bp Feature: gene Location: 180008-180991 bp Ori: OEA09736.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180173-180728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 801 73-1 80728 bp Feature: gene Location: 181114-181920 bp Feature: gene Location: 182545-183360 bp Ori: OEA09737.1 Feature: domain Description: Mrr_cat Location: 182845-183175 bp Feature: domain Description: Mrr_cat Location: 1 82845-1 831 75 bp Feature: domain Description: zf-C4_Topoisom Location: 183244-183352 bp Feature: domain Description: zf-C4_Topoisom Location: 1 83244-1 83352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), HipA_So_like (cd17809), RVT-Retrons, Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396)

Seq: MITT01000111.1 Vibrio parahaemolyticus strain CDC_K5073 CFSAN011194_contig0110, whole genome shotgun sequence (192573 bp)
Overview 1 RT 1: 138328-147001 bp Neighborhood of RT #1 [138328, 147001] ANK RVT-UG5 nitrilase Feature: gene Location: 138328-141012 bp Ori: ODZ98801.1 Feature: domain Description: ANK Location: 140560-140908 bp Feature: domain Description: ANK Location: 140560-140908 bp Feature: gene Location: 141400-141876 bp Feature: gene Location: 141909-144848 bp Ori: ODZ98849.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 142404-142875 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 142 404-142 875 bp Feature: domain Description: nitrilase Location: 144189-144774 bp Feature: domain Description: nitrilase Location: 144189-144774 bp Feature: gene Location: 145404-146522 bp Feature: gene Location: 146522-147001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-UG5, nitrilase (cl11424)