myRT

myRT report for GCA_001728855.1_1D4v1.0

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Seq: LXJP01000080.1 Pseudomonas sp. AP19 contig00080, whole genome shotgun sequence (24522 bp)
Overview 1 RT 1: 19589-24522 bp Neighborhood of RT #1 [19589, 24522] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 19589-19924 bp Ori: OEC63938.1 Feature: domain Description: TnpB_IS66 Location: 19607-19895 bp Feature: domain Description: TnpB_IS66 Location: 1 9607-1 9895 bp Feature: gene Location: 19986-21293 bp Feature: domain Description: LZ_Tnp_IS66 Location: 20118-20325 bp Feature: domain Description: LZ_Tnp_IS66 Location: 201 1 8-20325 bp Feature: domain Description: zf-IS66 Location: 20364-20478 bp Feature: domain Description: zf-IS66 Location: 20364-20478 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20520-21294 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20520-21 294 bp Feature: gene Location: 21872-23533 bp Ori: OEC63939.1 Feature: domain Description: RVT_N Location: 21917-22160 bp Feature: domain Description: RVT_N Location: 21 91 7-221 60 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22205-22841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22205-22841 bp Feature: domain Description: GIIM Note: maturase Location: 22898-23126 bp Feature: domain Description: GIIM Note: maturase Location: 22898-231 26 bp Feature: gene Location: 23898-24522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LXJP01000006.1 Pseudomonas sp. AP19 contig00006, whole genome shotgun sequence (170231 bp)
Overview 1 RT 1: 67091-71411 bp Neighborhood of RT #1 [67091, 71411] ICE_RAQPRD INT_RitA_C_like RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 67091-67423 bp Ori: OEC72978.1 Feature: domain Description: ICE_RAQPRD Location: 67118-67388 bp Feature: domain Description: ICE_RAQPRD Location: 67118-67388 bp Feature: gene Location: 68019-68435 bp Ori: OEC72979.1 Feature: domain Description: INT_RitA_C_like Location: 68217-68403 bp Feature: domain Description: INT_RitA_C_like Location: 682 17-68403 bp Feature: gene Location: 69284-70546 bp Ori: OEC72980.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 69503-70088 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 69503-70088 bp Feature: gene Location: 70651-70833 bp Ori: OEC72981.1 Feature: domain Description: CxxC_CXXC_SSSS Location: 70681-70786 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 70681-70786 bp Feature: gene Location: 70950-71411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ICE_RAQPRD (TIGR01690), INT_RitA_C_like (cd01188), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: LXJP01000081.1 Pseudomonas sp. AP19 contig00081, whole genome shotgun sequence (24405 bp)
Overview 1 RT 1: 4322-9636 bp Neighborhood of RT #1 [4322, 9636] RVT_N RVT-GII GIIM HNH Feature: gene Location: 4322-5113 bp Feature: gene Location: 5310-5612 bp Feature: gene Location: 5704-7413 bp Ori: OEC63827.1 Feature: domain Description: RVT_N Location: 5761-6004 bp Feature: domain Description: RVT_N Location: 5761-6004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6049-6685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6049-6685 bp Feature: domain Description: GIIM Note: maturase Location: 6736-6970 bp Feature: domain Description: GIIM Note: maturase Location: 673 6-6970 bp Feature: domain Description: HNH Note: nucleases Location: 7222-7360 bp Feature: domain Description: HNH Note: nucleases Location: 7222-73 60 bp Feature: gene Location: 8716-9198 bp Feature: gene Location: 9262-9636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)