myRT

myRT report for GCA_001729115.1_ASM172911v1

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Seq: LZFN01000160.1 Photobacterium damselae subsp. damselae strain A-162 CONTIG_58, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 37-1120 bp Neighborhood of RT #1 [37, 1347] RVT-GII GIIM Feature: gene Location: 37-1347 bp Ori: OEC81179.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-868 bp Feature: domain Description: GIIM Note: maturase Location: 919-1120 bp Feature: domain Description: GIIM Note: maturase Location: 91 9-1 1 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LZFN01000002.1 Photobacterium damselae subsp. damselae strain A-162 CONTIG_10, whole genome shotgun sequence (132864 bp)
Overview 1 RT 1: 119986-127761 bp Neighborhood of RT #1 [119986, 127772] AbiEii SLATT_5 RVT-UG17 PRK05367 PRK01202 Feature: gene Location: 119986-120927 bp Ori: OEC83962.1 Feature: domain Description: AbiEii Location: 120097-120886 bp Feature: domain Description: AbiEii Location: 12 0097-12 0886 bp Feature: gene Location: 122298-122864 bp Ori: OEC83963.1 Feature: domain Description: SLATT_5 Location: 122307-122838 bp Feature: domain Description: SLATT_5 Location: 12 2 307-12 2 838 bp Feature: gene Location: 122864-124198 bp Ori: OEC83964.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 123086-123668 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 12 3086-12 3668 bp Feature: gene Location: 124395-127268 bp Ori: OEC83965.1 Feature: domain Description: PRK05367 Location: 124419-127263 bp Feature: domain Description: PRK05367 Location: 12 4419-12 72 63 bp Feature: gene Location: 127389-127772 bp Ori: OEC83966.1 Feature: domain Description: PRK01202 Location: 127395-127761 bp Feature: domain Description: PRK012 02 Location: 12 7395-12 7761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), SLATT_5 (pfam18160), RVT-UG17, PRK05367 (aminomethyl-transferring glycine dehydrogenase), PRK01202 (glycine cleavage system protein GcvH)

Seq: LZFN01000144.1 Photobacterium damselae subsp. damselae strain A-162 CONTIG_42, whole genome shotgun sequence (14430 bp)
Overview 1 RT 1: 107-7397 bp Neighborhood of RT #1 [107, 7397] HipB HTH_XRE RVT-UNC Feature: gene Location: 107-1051 bp Ori: OEC81423.1 Feature: domain Description: HipB Location: 128-524 bp Feature: domain Description: HipB Location: 128-524 bp Feature: gene Location: 1216-1941 bp Ori: OEC81424.1 Feature: domain Description: HTH_XRE Location: 1234-1417 bp Feature: domain Description: HTH_XRE Location: 123 4-1417 bp Feature: gene Location: 3250-4077 bp Ori: OEC81425.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3619-4042 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 619-4042 bp Feature: gene Location: 4117-6315 bp Feature: gene Location: 6312-7397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), HTH_XRE (smart00530), RVT-UG18/RVT-UG4/RVT-CRISPR/RVT-UG17(RVT-UNC)