myRT

myRT report for GCA_001729375.1_ASM172937v1

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Seq: LZPK01000234.1 Methanosarcina sp. A14 contig_350, whole genome shotgun sequence (17911 bp)
Overview 1 RT 1: 5201-7632 bp Neighborhood of RT #1 [5201, 7766] RVT-CRISPR GIIM Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 5201-5731 bp Ori: OEC96873.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5204-5441 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5204-5441 bp Feature: domain Description: GIIM Note: maturase Location: 5579-5717 bp Feature: domain Description: GIIM Note: maturase Location: 5579-571 7 bp Feature: gene Location: 5868-6542 bp Ori: OEC96864.1 Feature: domain Description: Cas6b_N Location: 5889-6189 bp Feature: domain Description: Cas6b_N Location: 5889-61 89 bp Feature: domain Description: Cas6b_C Location: 6201-6534 bp Feature: domain Description: Cas6b_C Location: 6201 -6534 bp Feature: gene Location: 6582-7766 bp Ori: OEC96865.1 Feature: domain Description: DUF1887 Location: 6714-7086 bp Feature: domain Description: DUF1 887 Location: 671 4-7086 bp Feature: domain Description: DUF1887 Location: 7338-7632 bp Feature: domain Description: DUF1 887 Location: 7338-7632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: LZPK01000084.1 Methanosarcina sp. A14 contig_180, whole genome shotgun sequence (10685 bp)
Overview 1 RT 1: 1-3799 bp Neighborhood of RT #1 [1, 3816] RVT_N RVT-GII GIIM DppF DppD Feature: gene Location: 1-1263 bp Ori: OED07323.1 Feature: domain Description: RVT_N Location: 91-334 bp Feature: domain Description: RVT_N Location: 91-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1015 bp Feature: domain Description: GIIM Note: maturase Location: 1069-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1069-12 64 bp Feature: gene Location: 2259-2870 bp Ori: OED07324.1 Feature: domain Description: DppF Location: 2268-2856 bp Feature: domain Description: DppF Location: 2 2 68-2 856 bp Feature: gene Location: 2860-3816 bp Ori: OED07328.1 Feature: domain Description: DppD Location: 2893-3799 bp Feature: domain Description: DppD Location: 2 893-3799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DppF (COG1124), DppD (COG0444)

Seq: LZPK01000281.1 Methanosarcina sp. A14 contig_42, whole genome shotgun sequence (26343 bp)
Overview 1 RT 1: 8890-14775 bp Neighborhood of RT #1 [8890, 15179] PS_pyruv_trans DDE_Tnp_ISAZ013 RVT_N RVT-GII GIIM DnaC COG4584 Feature: gene Location: 8890-10185 bp Ori: OEC93480.1 Feature: domain Description: PS_pyruv_trans Location: 8944-9958 bp Feature: domain Description: PS_pyruv_trans Location: 8944-9958 bp Feature: gene Location: 10285-10659 bp Ori: OEC93481.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 10291-10609 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 10291-10609 bp Feature: gene Location: 10919-12598 bp Ori: OEC93493.1 Feature: domain Description: RVT_N Location: 10961-11201 bp Feature: domain Description: RVT_N Location: 10961-11201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11252-11909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11252-11909 bp Feature: domain Description: GIIM Note: maturase Location: 11960-12194 bp Feature: domain Description: GIIM Note: maturase Location: 11960-12194 bp Feature: gene Location: 13252-13932 bp Feature: domain Description: DnaC Location: 13255-13933 bp Feature: domain Description: DnaC Location: 13 255-13 93 3 bp Feature: gene Location: 13929-15179 bp Ori: OEC93482.1 Feature: domain Description: COG4584 Location: 13932-14775 bp Feature: domain Description: COG4584 Location: 13 93 2-14775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PS_pyruv_trans (pfam04230), DDE_Tnp_ISAZ013 (pfam07592), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484), COG4584 (Transposase )

Seq: LZPK01000134.1 Methanosarcina sp. A14 contig_238, whole genome shotgun sequence (10002 bp)
Overview 1 RT 1: 984-6168 bp Neighborhood of RT #1 [984, 6188] MULE RVT-UG7 YkgJ PRK08660 Feature: gene Location: 984-1763 bp Ori: OED05682.1 Feature: domain Description: MULE Location: 1215-1320 bp Feature: domain Description: MULE Location: 1215-1320 bp Feature: gene Location: 2187-3836 bp Ori: OED05683.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2649-3075 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 264 9-3075 bp Feature: gene Location: 4751-5305 bp Ori: OED05688.1 Feature: domain Description: YkgJ Location: 4817-5264 bp Feature: domain Description: YkgJ Location: 4 817-5264 bp Feature: gene Location: 5619-6188 bp Ori: OED05684.1 Feature: domain Description: PRK08660 Location: 5622-6168 bp Feature: domain Description: PRK08660 Location: 5622-6168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MULE (pfam10551), RVT-UG7, YkgJ (COG0727), PRK08660 (aldolase)