myRT

myRT report for GCA_001729995.1_AB1_flavo

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Seq: MDKZ01000244.1 Flavobacteriaceae bacterium (ex Bugula neritina AB1) isolate AB1-1 AB832_contig000244, whole genome shotgun sequence (4957 bp)
Overview 1 RT 1: 1-3883 bp Neighborhood of RT #1 [1, 3883] RVT-GII GIIM TssD Feature: gene Location: 1-268 bp Feature: gene Location: 852-2222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185-1830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 85-1 830 bp Feature: domain Description: GIIM Note: maturase Location: 1920-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1 920-21 33 bp Feature: gene Location: 2441-3145 bp Feature: domain Description: TssD Location: 2444-2816 bp Feature: domain Description: TssD Location: 2444-281 6 bp Feature: gene Location: 3149-3883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TssD (pfam17642), RVT-GII, GIIM (pfam08388)

Seq: MDKZ01000310.1 Flavobacteriaceae bacterium (ex Bugula neritina AB1) isolate AB1-1 AB832_contig000310, whole genome shotgun sequence (26735 bp)
Overview 1 RT 1: 1887-6144 bp Neighborhood of RT #1 [1887, 6323] mpi HxlR RVT-GII Intron_maturas2 HNHc LRAT Feature: gene Location: 1887-2516 bp Feature: domain Description: mpi Location: 1905-2493 bp Feature: domain Description: mpi Location: 1905-2 493 bp Feature: gene Location: 2618-2968 bp Feature: domain Description: HxlR Location: 2642-2957 bp Feature: domain Description: HxlR Location: 2 642 -2 957 bp Feature: gene Location: 3625-5346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3793-4585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3793-4585 bp Feature: domain Description: Intron_maturas2 Location: 4699-4915 bp Feature: domain Description: Intron_maturas2 Location: 4699-4915 bp Feature: domain Description: HNHc Note: nucleases Location: 5116-5305 bp Feature: domain Description: HNHc Note: nucleases Location: 5116-5305 bp Feature: gene Location: 5482-5724 bp Feature: gene Location: 5790-6323 bp Feature: domain Description: LRAT Location: 5832-6144 bp Feature: domain Description: LRAT Location: 5832 -6144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mpi (PRK13413), HxlR (pfam01638), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), LRAT (pfam04970)