myRT

myRT report for GCA_001730015.1_AB1_chromatiales

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Seq: MDLA01000041.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000041, whole genome shotgun sequence (78934 bp)
Overview 1 RT 1: 8285-13090 bp Neighborhood of RT #1 [8285, 13374] FabG DacB DacB RVT-GII group_II_RT_mat TPR Feature: gene Location: 8285-9055 bp Ori: OED44150.1 Feature: domain Description: FabG Location: 8306-9014 bp Feature: domain Description: FabG Location: 8306-901 4 bp Feature: gene Location: 9233-10555 bp Ori: OED44151.1 Feature: domain Description: DacB Location: 9308-9734 bp Feature: domain Description: DacB Location: 9308-9734 bp Feature: domain Description: DacB Location: 9818-10448 bp Feature: domain Description: DacB Location: 981 8-1 0448 bp Feature: gene Location: 11354-12094 bp Ori: OED44152.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11357-11573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 357-1 1 573 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11588-11891 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 588-1 1 891 bp Feature: gene Location: 12170-12367 bp Feature: gene Location: 12364-13374 bp Ori: OED44154.1 Feature: domain Description: TPR Location: 12850-13090 bp Feature: domain Description: TPR Location: 1 2850-1 3090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FabG (COG1028), DacB (COG2027), RVT-GII, group_II_RT_mat (TIGR04416), TPR (smart00028)

Seq: MDLA01000158.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000158, whole genome shotgun sequence (96433 bp)
Overview 1 RT 1: 463-5431 bp 2 RT 2: 94103-96291 bp Neighborhood of RT #1 [463, 5634] COG5606 RVT-Retrons PDZ_metalloprotease MPP_PhoD Neighborhood of RT #2 [94103, 96389] SodA RVT-GII GIIM Feature: gene Location: 463-729 bp Feature: gene Location: 1090-1365 bp Ori: OED37389.1 Feature: domain Description: COG5606 Location: 1117-1345 bp Feature: domain Description: COG5606 Location: 1117-1345 bp Feature: gene Location: 2131-3423 bp Ori: OED37390.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2581-3199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 581-3199 bp Feature: gene Location: 3766-4695 bp Ori: OED37391.1 Feature: domain Description: PDZ_metalloprotease Location: 4432-4630 bp Feature: domain Description: PDZ_metalloprotease Location: 4432 -4630 bp Feature: gene Location: 4753-5634 bp Ori: OED37392.1 Feature: domain Description: MPP_PhoD Location: 4771-5431 bp Feature: domain Description: MPP_PhoD Location: 4771-5431 bp Feature: gene Location: 94103-94711 bp Ori: OED37454.1 Feature: domain Description: SodA Location: 94106-94706 bp Feature: domain Description: SodA Location: 94106-94706 bp Feature: gene Location: 94914-95612 bp Feature: gene Location: 95913-96389 bp Ori: OED37456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95919-96012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95919-96012 bp Feature: domain Description: GIIM Note: maturase Location: 96081-96291 bp Feature: domain Description: GIIM Note: maturase Location: 96081-962 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5606 (Predicted DNA-binding protein, XRE-type HTH domain ), RVT-Retrons, PDZ_metalloprotease (cd00989), MPP_PhoD (cd07389), SodA (COG0605), RVT-GII, GIIM (pfam08388)

Seq: MDLA01000125.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000125, whole genome shotgun sequence (111120 bp)
Overview 1 RT 1: 84369-90766 bp Neighborhood of RT #1 [84369, 90774] YfmG Hrd RVT-DGRs YfmG SYLF Feature: gene Location: 84369-86984 bp Ori: OED39393.1 Feature: domain Description: YfmG Location: 86259-86931 bp Feature: domain Description: YfmG Location: 86259-8693 1 bp Feature: gene Location: 87076-87567 bp Ori: OED39394.1 Feature: domain Description: Hrd Location: 87334-87529 bp Feature: domain Description: Hrd Location: 873 3 4-87529 bp Feature: gene Location: 87564-88547 bp Ori: OED39395.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 87774-88356 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 87774-883 56 bp Feature: gene Location: 88878-89783 bp Ori: OED39421.1 Feature: domain Description: YfmG Location: 88998-89760 bp Feature: domain Description: YfmG Location: 88998-89760 bp Feature: gene Location: 90190-90774 bp Ori: OED39396.1 Feature: domain Description: SYLF Location: 90325-90766 bp Feature: domain Description: SYLF Location: 903 25-90766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs, SYLF (COG2930)

Seq: MDLA01000175.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000175, whole genome shotgun sequence (320010 bp)
Overview 1 RT 1: 7449-15205 bp Neighborhood of RT #1 [7449, 16314] Hrd Avd_like RVT-DGRs pfam03781 Hydrolase_4 CHAT Feature: gene Location: 7449-7979 bp Ori: OED36240.1 Feature: domain Description: Hrd Location: 7716-7932 bp Feature: domain Description: Hrd Location: 7716-7932 bp Feature: gene Location: 7972-8331 bp Ori: OED36241.1 Feature: domain Description: Avd_like Location: 7999-8305 bp Feature: domain Description: Avd_like Location: 7999-8305 bp Feature: gene Location: 8328-9680 bp Ori: OED36242.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8535-9123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8535-9123 bp Feature: gene Location: 9740-10654 bp Ori: OED36478.1 Feature: domain Description: pfam03781 Location: 9821-10592 bp Feature: domain Description: pfam03781 Location: 9821-10592 bp Feature: gene Location: 10846-16314 bp Ori: OED36243.1 Feature: domain Description: Hydrolase_4 Location: 12568-12712 bp Feature: domain Description: Hydrolase_4 Location: 12568-12712 bp Feature: domain Description: CHAT Location: 14350-15205 bp Feature: domain Description: CHAT Location: 14 350-15205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hrd (LOAD_Hrd), Avd_like (cd16376), RVT-DGRs, pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Hydrolase_4 (pfam12146), CHAT (pfam12770)

Seq: MDLA01000194.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000194, whole genome shotgun sequence (86051 bp)
Overview 1 RT 1: 75-2948 bp Neighborhood of RT #1 [75, 2953] RVT-GII dmdA ANK ANK Feature: gene Location: 75-473 bp Feature: gene Location: 641-991 bp Ori: OED35200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647-851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647-85 1 bp Feature: gene Location: 1051-2208 bp Ori: OED35201.1 Feature: domain Description: dmdA Location: 1093-2167 bp Feature: domain Description: dmdA Location: 1093-2167 bp Feature: gene Location: 2240-2953 bp Ori: OED35202.1 Feature: domain Description: ANK Location: 2390-2642 bp Feature: domain Description: ANK Location: 2390-2642 bp Feature: domain Description: ANK Location: 2684-2948 bp Feature: domain Description: ANK Location: 2684-2948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, dmdA (PRK12486), ANK (smart00248)

Seq: MDLA01000033.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000033, whole genome shotgun sequence (8283 bp)
Overview 1 RT 1: 1371-8282 bp Neighborhood of RT #1 [1371, 8283] COG4584 COG4584 DDE_Tnp_1 RVT-GII GIIM RVT-GII GIIM PstC DUF3333 PstA Feature: gene Location: 1371-2927 bp Ori: OED44406.1 Feature: domain Description: COG4584 Location: 1485-2283 bp Feature: domain Description: COG4584 Location: 1485-2283 bp Feature: domain Description: COG4584 Location: 2328-2844 bp Feature: domain Description: COG4584 Location: 2328-2844 bp Feature: gene Location: 3211-3852 bp Ori: OED44402.1 Feature: domain Description: DDE_Tnp_1 Location: 3313-3547 bp Feature: domain Description: DDE_Tnp_1 Location: 3313-3547 bp Feature: gene Location: 3883-4989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3949-4606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3949-46 06 bp Feature: domain Description: GIIM Note: maturase Location: 4687-4906 bp Feature: domain Description: GIIM Note: maturase Location: 46 87-4906 bp Feature: gene Location: 5000-5650 bp Ori: OED44403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5072-5216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5072-5216 bp Feature: domain Description: GIIM Note: maturase Location: 5255-5483 bp Feature: domain Description: GIIM Note: maturase Location: 5255-5483 bp Feature: gene Location: 5827-7206 bp Ori: OED44404.1 Feature: domain Description: PstC Location: 6289-7198 bp Feature: domain Description: PstC Location: 6 289-7198 bp Feature: gene Location: 7199-8283 bp Ori: OED44405.1 Feature: domain Description: DUF3333 Location: 7259-7694 bp Feature: domain Description: DUF3333 Location: 7259-76 94 bp Feature: domain Description: PstA Location: 7742-8282 bp Feature: domain Description: PstA Location: 7742-8282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PstC (COG0573), DUF3333 (pfam11812), PstA (COG0581)

Seq: MDLA01000080.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000080, whole genome shotgun sequence (316295 bp)
Overview 1 RT 1: 150661-158899 bp Neighborhood of RT #1 [150661, 158982] DUF563 GH115_C DUF11 GH115_C RVT-GII GIIM AglD2 SDR_a4 Feature: gene Location: 150661-152013 bp Ori: OED42356.1 Feature: domain Description: DUF563 Location: 151264-151891 bp Feature: domain Description: DUF563 Location: 151264-151891 bp Feature: gene Location: 152166-154724 bp Ori: OED42357.1 Feature: domain Description: GH115_C Location: 152451-152763 bp Feature: domain Description: GH115_C Location: 152451-1527 63 bp Feature: domain Description: DUF11 Location: 152958-153174 bp Feature: domain Description: DUF11 Location: 152958-15317 4 bp Feature: domain Description: GH115_C Location: 153789-154251 bp Feature: domain Description: GH115_C Location: 1537 89-154251 bp Feature: gene Location: 155359-156645 bp Ori: OED42474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155611-156268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155611-156268 bp Feature: domain Description: GIIM Note: maturase Location: 156337-156547 bp Feature: domain Description: GIIM Note: maturase Location: 156337 -156547 bp Feature: gene Location: 156959-157978 bp Ori: OED42358.1 Feature: domain Description: AglD2 Location: 157034-157919 bp Feature: domain Description: AglD2 Location: 157 034-157 919 bp Feature: gene Location: 158077-158982 bp Ori: OED42359.1 Feature: domain Description: SDR_a4 Location: 158092-158899 bp Feature: domain Description: SDR_a4 Location: 158092-158899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF563 (pfam04577), GH115_C (pfam17829), DUF11 (pfam01345), RVT-GII, GIIM (pfam08388), AglD2 (COG0392), SDR_a4 (cd05266)

Seq: MDLA01000051.1 Chromatiales bacterium (ex Bugula neritina AB1) isolate AB1-2 AB833_contig000051, whole genome shotgun sequence (11717 bp)
Overview 1 RT 1: 4560-8292 bp Neighborhood of RT #1 [4560, 8312] YfmG Hrd RVT-DGRs YfmG YfmG Feature: gene Location: 4560-5369 bp Ori: OED43785.1 Feature: domain Description: YfmG Location: 4659-5331 bp Feature: domain Description: YfmG Location: 4659-5331 bp Feature: gene Location: 5366-5983 bp Ori: OED43780.1 Feature: domain Description: Hrd Location: 5747-5951 bp Feature: domain Description: Hrd Location: 5747-5951 bp Feature: gene Location: 5976-6989 bp Ori: OED43781.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6186-6774 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 618 6-6774 bp Feature: gene Location: 7021-7485 bp Ori: OED43782.1 Feature: domain Description: YfmG Location: 7024-7138 bp Feature: domain Description: YfmG Location: 7024-7138 bp Feature: gene Location: 7485-8312 bp Ori: OED43783.1 Feature: domain Description: YfmG Location: 7614-8292 bp Feature: domain Description: YfmG Location: 7614-8 292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs