myRT

myRT report for GCA_001730145.1_ASM173014v1

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Seq: MCGK01000023.1 Aliivibrio fischeri strain ZF25 ZF25_contig_12, whole genome shotgun sequence (283794 bp)
Overview 1 RT 1: 22582-28734 bp Neighborhood of RT #1 [22582, 28736] YcjD RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 22582-22932 bp Ori: OED56302.1 Feature: domain Description: YcjD Location: 22603-22924 bp Feature: domain Description: YcjD Location: 22603-22924 bp Feature: gene Location: 23486-23866 bp Feature: gene Location: 23959-25611 bp Feature: domain Description: RVT_N Location: 24016-24259 bp Feature: domain Description: RVT_N Location: 2401 6-24259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24304-24949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24304-24949 bp Feature: domain Description: GIIM Note: maturase Location: 25000-25234 bp Feature: domain Description: GIIM Note: maturase Location: 25000-25234 bp Feature: domain Description: HNHc Note: nucleases Location: 25444-25612 bp Feature: domain Description: HNHc Note: nucleases Location: 25444-2561 2 bp Feature: gene Location: 26722-28368 bp Ori: OED56304.1 Feature: domain Description: groEL Location: 26728-28348 bp Feature: domain Description: groEL Location: 26728-28348 bp Feature: gene Location: 28446-28736 bp Ori: OED56305.1 Gene: groES Feature: domain Description: groES Location: 28449-28734 bp Feature: domain Description: groES Location: 28449-28734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjD (COG2852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: MCGK01000024.1 Aliivibrio fischeri strain ZF25 ZF25_contig_13, whole genome shotgun sequence (491288 bp)
Overview 1 RT 1: 30180-36289 bp Neighborhood of RT #1 [30180, 36294] BRCT_DNA_ligase_like SLATT_5 RVT-UG3 RVT-UG8 int PRK05096 Feature: gene Location: 30180-30668 bp Ori: OED56161.1 Feature: domain Description: BRCT_DNA_ligase_like Location: 30438-30630 bp Feature: domain Description: BRCT_DNA_ligase_like Location: 30438-30630 bp Feature: gene Location: 30671-31399 bp Ori: OED55771.1 Feature: domain Description: SLATT_5 Location: 30797-31370 bp Feature: domain Description: SLATT_5 Location: 30797-31370 bp Feature: gene Location: 31393-32526 bp Ori: OED55772.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 31681-32170 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 31681-32 170 bp Feature: gene Location: 32663-34663 bp Ori: OED55773.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33185-33653 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33185-33653 bp Feature: gene Location: 34888-35154 bp Ori: OED55774.1 Feature: domain Description: int Location: 34891-35152 bp Feature: domain Description: int Location: 34891-35152 bp Feature: gene Location: 35251-36294 bp Ori: OED55775.1 Feature: domain Description: PRK05096 Location: 35254-36289 bp Feature: domain Description: PRK05096 Location: 352 54-362 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRCT_DNA_ligase_like (cd17748), SLATT_5 (pfam18160), RVT-UG3, RVT-UG8, int (PHA02601), PRK05096 (guanosine 5'-monophosphate oxidoreductase; Provisional)