myRT

myRT report for GCA_001730405.1_ASM173040v1

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Seq: MINV01000125.1 Shigella sp. FC3196 NODE_212_length_6537_cov_57.0312_ID_423, whole genome shotgun sequence (6537 bp)
Overview 1 RT 1: 66-2780 bp Neighborhood of RT #1 [66, 2794] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 66-194 bp Feature: gene Location: 194-325 bp Feature: domain Description: DDE_Tnp_IS66 Location: 206-299 bp Feature: domain Description: DDE_Tnp_IS66 Location: 206-299 bp Feature: gene Location: 803-2020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1 643 bp Feature: domain Description: GIIM Note: maturase Location: 1721-1943 bp Feature: domain Description: GIIM Note: maturase Location: 1 721 -1 943 bp Feature: gene Location: 2139-2282 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2148-2259 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 48-2259 bp Feature: gene Location: 2309-2794 bp Feature: domain Description: COG3547 Location: 2327-2780 bp Feature: domain Description: COG3547 Location: 2327-2780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)