myRT

myRT report for GCA_001730715.1_ASM173071v1

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Seq: MIJU01000084.1 Halanaerobium sp. MDAL1 NODE_341_length_6190_cov_90.6166_ID_1284151, whole genome shotgun sequence (6190 bp)
Overview 1 RT 1: 1-6190 bp Neighborhood of RT #1 [1, 6190] RVT-GII GIIM Tar Tar Feature: gene Location: 1-1058 bp Feature: gene Location: 1587-3002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 938-2556 bp Feature: domain Description: GIIM Note: maturase Location: 2607-2838 bp Feature: domain Description: GIIM Note: maturase Location: 2607-2838 bp Feature: gene Location: 3150-5342 bp Feature: domain Description: Tar Location: 3822-4155 bp Feature: domain Description: Tar Location: 3822-41 55 bp Feature: domain Description: Tar Location: 4356-5337 bp Feature: domain Description: Tar Location: 4356-5337 bp Feature: gene Location: 5337-6190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tar (COG0840)

Seq: MIJU01000079.1 Halanaerobium sp. MDAL1 NODE_31_length_28465_cov_120.759_ID_1283531, whole genome shotgun sequence (28465 bp)
Overview 1 RT 1: 660-7781 bp Neighborhood of RT #1 [660, 7870] ligA pcrA RVT-GII Intron_maturas2 HNHc pcrA GIY-YIG_COG1833 Feature: gene Location: 660-2675 bp Feature: domain Description: ligA Location: 678-2658 bp Feature: domain Description: ligA Location: 678-2 658 bp Feature: gene Location: 2688-4073 bp Feature: domain Description: pcrA Location: 2691-4065 bp Feature: domain Description: pcrA Location: 2 691-4065 bp Feature: gene Location: 4190-6034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4454-5291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4454-52 91 bp Feature: domain Description: Intron_maturas2 Location: 5360-5726 bp Feature: domain Description: Intron_maturas2 Location: 5360-572 6 bp Feature: domain Description: HNHc Note: nucleases Location: 5846-6005 bp Feature: domain Description: HNHc Note: nucleases Location: 5846-6005 bp Feature: gene Location: 6612-7396 bp Feature: domain Description: pcrA Location: 6633-7377 bp Feature: domain Description: pcrA Location: 6633-7377 bp Feature: gene Location: 7427-7870 bp Feature: domain Description: GIY-YIG_COG1833 Location: 7451-7781 bp Feature: domain Description: GIY-YIG_COG1833 Location: 7451-7781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ligA (PRK14351), GIY-YIG_COG1833 (cd10441)