myRT

myRT report for GCA_001735565.1_ASM173556v1

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Seq: MDST01000041.1 Vibrio cholerae strain S12 VCS12_contig000041_Vibrio_cholerae_strain_S-12, whole genome shotgun sequence (582177 bp)
Overview 1 RT 1: 8692-15687 bp 2 RT 2: 307626-311844 bp Neighborhood of RT #1 [8692, 15704] YjgR YjgR SIR2_2 RVT_N RVT-GII GIIM TnpB_IS66 Neighborhood of RT #2 [307626, 311852] INT_ICEBs1_C_like RVT-UG17 SLATT_5 PRK07578 Feature: gene Location: 8692-10485 bp Ori: OEG76072.1 Feature: domain Description: YjgR Location: 9181-9331 bp Feature: domain Description: YjgR Location: 91 81 -9331 bp Feature: domain Description: YjgR Location: 9973-10372 bp Feature: domain Description: YjgR Location: 9973-1 0372 bp Feature: gene Location: 10498-11757 bp Ori: OEG76073.1 Feature: domain Description: SIR2_2 Location: 11083-11545 bp Feature: domain Description: SIR2_2 Location: 1 1 083-1 1 545 bp Feature: gene Location: 12491-13963 bp Ori: OEG76074.1 Feature: domain Description: RVT_N Location: 12539-12782 bp Feature: domain Description: RVT_N Location: 1 2539-1 2782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12827-13454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2827-1 3454 bp Feature: domain Description: GIIM Note: maturase Location: 13517-13739 bp Feature: domain Description: GIIM Note: maturase Location: 1 351 7-1 3739 bp Feature: gene Location: 15268-15588 bp Feature: gene Location: 15585-15704 bp Feature: domain Description: TnpB_IS66 Location: 15612-15687 bp Feature: domain Description: TnpB_IS66 Location: 1 561 2-1 5687 bp Feature: gene Location: 307626-307955 bp Feature: gene Location: 308462-308623 bp Ori: OEG76514.1 Feature: domain Description: INT_ICEBs1_C_like Location: 308471-308549 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 308471 -308549 bp Feature: gene Location: 308835-310166 bp Ori: OEG76278.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 309063-309666 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 309063-309666 bp Feature: gene Location: 310168-310821 bp Ori: OEG76279.1 Feature: domain Description: SLATT_5 Location: 310177-310765 bp Feature: domain Description: SLATT_5 Location: 31 01 77-31 0765 bp Feature: gene Location: 311247-311852 bp Ori: OEG76280.1 Feature: domain Description: PRK07578 Location: 311256-311844 bp Feature: domain Description: PRK07578 Location: 31 1 256-31 1 844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), SIR2_2 (pfam13289), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), INT_ICEBs1_C_like (cd01189), RVT-UG17, SLATT_5 (pfam18160), PRK07578 (short chain dehydrogenase; Provisional)

Seq: MDST01000035.1 Vibrio cholerae strain S12 VCS12_contig000035_Vibrio_cholerae_strain_S-12, whole genome shotgun sequence (11446 bp)
Overview 1 RT 1: 3609-7480 bp Neighborhood of RT #1 [3609, 7485] RVT-UG7 GrpB StbD Feature: gene Location: 3609-4091 bp Feature: gene Location: 4325-4729 bp Feature: gene Location: 4884-6422 bp Ori: OEG76701.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5256-5676 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 52 56-5676 bp Feature: gene Location: 6556-7029 bp Ori: OEG76702.1 Feature: domain Description: GrpB Location: 6598-7027 bp Feature: domain Description: GrpB Location: 6598-702 7 bp Feature: gene Location: 7234-7485 bp Ori: OEG76703.1 Feature: domain Description: StbD Location: 7246-7480 bp Feature: domain Description: StbD Location: 72 46-7480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, GrpB (pfam04229), StbD (COG2161)

Seq: MDST01000020.1 Vibrio cholerae strain S12 VCS12_contig000020_Vibrio_cholerae_strain_S-12, whole genome shotgun sequence (261968 bp)
Overview 1 RT 1: 160328-167456 bp Neighborhood of RT #1 [160328, 167458] EFP_modif_epmB RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 160328-161350 bp Ori: OEG77165.1 Feature: domain Description: EFP_modif_epmB Location: 160376-161333 bp Feature: domain Description: EFP_modif_epmB Location: 1603 76-1613 3 3 bp Feature: gene Location: 161387-161947 bp Feature: gene Location: 162697-164358 bp Ori: OEG77167.1 Feature: domain Description: RVT_N Location: 162742-162985 bp Feature: domain Description: RVT_N Location: 162742-162985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163030-163675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 03 0-163 675 bp Feature: domain Description: GIIM Note: maturase Location: 163726-163960 bp Feature: domain Description: GIIM Note: maturase Location: 163 726-163 960 bp Feature: domain Description: HNHc Note: nucleases Location: 164173-164329 bp Feature: domain Description: HNHc Note: nucleases Location: 164173 -1643 29 bp Feature: gene Location: 165480-167114 bp Ori: OEG77168.1 Feature: domain Description: groEL Location: 165486-167109 bp Feature: domain Description: groEL Location: 165486-167109 bp Feature: gene Location: 167168-167458 bp Ori: OEG77169.1 Gene: groES Feature: domain Description: groES Location: 167171-167456 bp Feature: domain Description: groES Location: 167171-167456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFP_modif_epmB (TIGR03821), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)