myRT

myRT report for GCA_001742375.1_ASM174237v1

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Seq: LNUL01000114.1 Lactobacillus coryniformis subsp. coryniformis strain CRL 1001 Contig0114, whole genome shotgun sequence (17446 bp)
Overview 1 RT 1: 369-4841 bp Neighborhood of RT #1 [369, 4873] RVT-GII GIIM acc_ester MFS_DtpA_like Feature: gene Location: 369-1751 bp Ori: OEH89181.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687-1 305 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1572 bp Feature: domain Description: GIIM Note: maturase Location: 1 359-1 572 bp Feature: gene Location: 2476-3303 bp Ori: OEH89182.1 Feature: domain Description: acc_ester Location: 2485-3217 bp Feature: domain Description: acc_ester Location: 2485-321 7 bp Feature: gene Location: 3413-4873 bp Ori: OEH89183.1 Feature: domain Description: MFS_DtpA_like Location: 3452-4841 bp Feature: domain Description: MFS_DtpA_like Location: 3452-4841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), acc_ester (TIGR03729), MFS_DtpA_like (cd17346)

Seq: LNUL01000067.1 Lactobacillus coryniformis subsp. coryniformis strain CRL 1001 Contig0067, whole genome shotgun sequence (29166 bp)
Overview 1 RT 1: 16195-20084 bp Neighborhood of RT #1 [16195, 20084] HTH_XRE Rol_Rep_N Rep_trans RVT-UNC Feature: gene Location: 16195-16437 bp Feature: gene Location: 16434-17633 bp Ori: OEH89921.1 Feature: domain Description: HTH_XRE Location: 16449-16584 bp Feature: domain Description: HTH_XRE Location: 16449-16584 bp Feature: domain Description: Rol_Rep_N Location: 16629-16896 bp Feature: domain Description: Rol_Rep_N Location: 1662 9-16896 bp Feature: domain Description: Rep_trans Location: 16920-17514 bp Feature: domain Description: Rep_trans Location: 1692 0-17514 bp Feature: gene Location: 18070-19020 bp Ori: OEH89922.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 18487-18928 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 18487-1892 8 bp Feature: gene Location: 19023-19772 bp Feature: gene Location: 19824-20084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-UG10/RVT-UG12/RVT-UG19/RVT-UG8(RVT-UNC)

Seq: LNUL01000115.1 Lactobacillus coryniformis subsp. coryniformis strain CRL 1001 Contig0115, whole genome shotgun sequence (30411 bp)
Overview 1 RT 1: 1099-4947 bp Neighborhood of RT #1 [1099, 5012] ABC2_membrane gpmA RVT-Retrons HTH_XRE Phage_int_SAM_5 INT_ICEBs1_C_like Feature: gene Location: 1099-1800 bp Ori: OEH89152.1 Feature: domain Description: ABC2_membrane Location: 1132-1693 bp Feature: domain Description: ABC2_membrane Location: 113 2-1693 bp Feature: gene Location: 1857-2138 bp Ori: OEH89153.1 Feature: domain Description: gpmA Location: 1920-2133 bp Feature: domain Description: gpmA Location: 1920-213 3 bp Feature: gene Location: 2375-3133 bp Ori: OEH89154.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2450-2996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2450-2996 bp Feature: gene Location: 3214-3501 bp Ori: OEH89155.1 Feature: domain Description: HTH_XRE Location: 3223-3388 bp Feature: domain Description: HTH_XRE Location: 3 223 -3 3 88 bp Feature: gene Location: 4020-5012 bp Ori: OEH89156.1 Feature: domain Description: Phage_int_SAM_5 Location: 4074-4329 bp Feature: domain Description: Phage_int_SAM_5 Location: 4074-43 29 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4455-4947 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4455-4947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane (pfam01061), gpmA (PRK14120), RVT-Retrons, HTH_XRE (smart00530), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189)