myRT

myRT report for GCA_001746455.1_ASM174645v1

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Seq: MEHM01000001.1 Streptomyces agglomeratus strain 9-3-15 S0, whole genome shotgun sequence (8142030 bp)
Overview 1 RT 1: 467063-471689 bp 2 RT 2: 8029745-8033019 bp 3 RT 3: 8085298-8090508 bp Neighborhood of RT #1 [467063, 471844] RpoE RVT-GII DUF4096 nicotinamidase_related Neighborhood of RT #2 [8029745, 8033090] InsE PHA02517 RVT-GII GIIM Tra8 STAS_anti-anti-sigma_factors Neighborhood of RT #3 [8085298, 8090508] DDE_Tnp_ISAZ013 RVT-GII PHA02517 Feature: gene Location: 467063-467695 bp Ori: OEJ55387.1 Feature: domain Description: RpoE Location: 467105-467645 bp Feature: domain Description: RpoE Location: 4671 05-467645 bp Feature: gene Location: 467869-468760 bp Feature: gene Location: 468862-469790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468865-469402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468865-469402 bp Feature: gene Location: 470513-470743 bp Ori: OEJ49784.1 Feature: domain Description: DUF4096 Location: 470519-470705 bp Feature: domain Description: DUF4096 Location: 47051 9-470705 bp Feature: gene Location: 471245-471844 bp Ori: OEJ49785.1 Feature: domain Description: nicotinamidase_related Location: 471257-471689 bp Feature: domain Description: nicotinamidase_related Location: 471 257-471 689 bp Feature: gene Location: 8029745-8030053 bp Ori: OEJ56187.1 Feature: domain Description: InsE Location: 8029760-8030030 bp Feature: domain Description: InsE Location: 8029760-8030030 bp Feature: gene Location: 8030050-8030967 bp Ori: OEJ55255.1 Feature: domain Description: PHA02517 Location: 8030110-8030920 bp Feature: domain Description: PHA0251 7 Location: 80301 1 0-8030920 bp Feature: gene Location: 8031055-8031468 bp Ori: OEJ55256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8031058-8031193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8031 058-8031 1 93 bp Feature: domain Description: GIIM Note: maturase Location: 8031250-8031448 bp Feature: domain Description: GIIM Note: maturase Location: 8031 250-8031 448 bp Feature: gene Location: 8032034-8032558 bp Ori: OEJ55257.1 Feature: domain Description: Tra8 Location: 8032046-8032448 bp Feature: domain Description: Tra8 Location: 8032046-8032448 bp Feature: gene Location: 8032716-8033090 bp Ori: OEJ55258.1 Feature: domain Description: STAS_anti-anti-sigma_factors Location: 8032749-8033019 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 8032749-803301 9 bp Feature: gene Location: 8085298-8085583 bp Feature: gene Location: 8085727-8087349 bp Ori: OEJ56192.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 8085979-8086897 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 8085979-8086897 bp Feature: gene Location: 8087441-8088321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8087447-8087933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8087447-8087933 bp Feature: gene Location: 8088423-8089305 bp Feature: domain Description: PHA02517 Location: 8088492-8088822 bp Feature: domain Description: PHA0251 7 Location: 8088492-8088822 bp Feature: gene Location: 8089885-8090508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, DUF4096 (pfam13340), nicotinamidase_related (cd01014), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), Tra8 (COG2826), STAS_anti-anti-sigma_factors (cd07043), DDE_Tnp_ISAZ013 (pfam07592)

Seq: MEHM01000002.1 Streptomyces agglomeratus strain 9-3-15 S1, whole genome shotgun sequence (308543 bp)
Overview 1 RT 1: 121160-128627 bp 2 RT 2: 171187-175283 bp 3 RT 3: 209595-214263 bp Neighborhood of RT #1 [121160, 128743] PnbA Tra8 RVT_N RVT-GII GIIM HTH_38 Tra8 AAA_16 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 Neighborhood of RT #2 [171187, 175396] AbiEi_4 COG3293 COG3293 RVT-GII GIIM COG3464 nicotinamidase_related Neighborhood of RT #3 [209595, 214286] RVT-GII RVT-GII Intron_maturas2 PHA02517 InsE Feature: gene Location: 121160-122662 bp Ori: OEJ36651.1 Feature: domain Description: PnbA Location: 121172-122633 bp Feature: domain Description: PnbA Location: 12 1172 -12 2 633 bp Feature: gene Location: 122825-123280 bp Feature: domain Description: Tra8 Location: 122840-123260 bp Feature: domain Description: Tra8 Location: 12 2 840-12 32 60 bp Feature: gene Location: 123354-125156 bp Ori: OEJ36787.1 Feature: domain Description: RVT_N Location: 123438-123675 bp Feature: domain Description: RVT_N Location: 12 3438-12 3675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123735-124395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3735-12 4395 bp Feature: domain Description: GIIM Note: maturase Location: 124452-124680 bp Feature: domain Description: GIIM Note: maturase Location: 12 4452 -12 4680 bp Feature: gene Location: 125836-126564 bp Feature: domain Description: HTH_38 Location: 125875-125950 bp Feature: domain Description: HTH_38 Location: 12 5875-12 5950 bp Feature: domain Description: Tra8 Location: 126022-126565 bp Feature: domain Description: Tra8 Location: 12 602 2 -12 6565 bp Feature: gene Location: 126722-128743 bp Ori: OEJ36788.1 Feature: domain Description: AAA_16 Location: 126773-127049 bp Feature: domain Description: AAA_16 Location: 12 6773-12 7049 bp Feature: domain Description: TPR_10 Location: 128009-128126 bp Feature: domain Description: TPR_10 Location: 12 8009-12 812 6 bp Feature: domain Description: TPR_10 Location: 128129-128252 bp Feature: domain Description: TPR_10 Location: 12 812 9-12 82 52 bp Feature: domain Description: TPR_10 Location: 128255-128378 bp Feature: domain Description: TPR_10 Location: 12 82 55-12 8378 bp Feature: domain Description: TPR_10 Location: 128381-128504 bp Feature: domain Description: TPR_10 Location: 12 8381-12 8504 bp Feature: domain Description: TPR_10 Location: 128507-128627 bp Feature: domain Description: TPR_10 Location: 12 8507-12 862 7 bp Feature: gene Location: 171187-171567 bp Ori: OEJ36796.1 Feature: domain Description: AbiEi_4 Location: 171400-171553 bp Feature: domain Description: AbiEi_4 Location: 171400-171553 bp Feature: gene Location: 171582-172388 bp Ori: OEJ36682.1 Feature: domain Description: COG3293 Location: 171588-171843 bp Feature: domain Description: COG32 93 Location: 171588-171843 bp Feature: domain Description: COG3293 Location: 171954-172338 bp Feature: domain Description: COG32 93 Location: 171954-172 338 bp Feature: gene Location: 172914-174401 bp Ori: OEJ36683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173238-173934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1732 38-173934 bp Feature: domain Description: GIIM Note: maturase Location: 174003-174225 bp Feature: domain Description: GIIM Note: maturase Location: 174003-1742 2 5 bp Feature: gene Location: 174543-174740 bp Ori: OEJ36684.1 Feature: domain Description: COG3464 Location: 174573-174738 bp Feature: domain Description: COG3464 Location: 174573-174738 bp Feature: gene Location: 174833-175396 bp Ori: OEJ36685.1 Feature: domain Description: nicotinamidase_related Location: 174866-175283 bp Feature: domain Description: nicotinamidase_related Location: 174866-1752 83 bp Feature: gene Location: 209595-211422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209862-210252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 09862 -2 102 52 bp Feature: gene Location: 211546-213042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211810-212605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11810-2 12 605 bp Feature: domain Description: Intron_maturas2 Location: 212707-212938 bp Feature: domain Description: Intron_maturas2 Location: 2 12 707-2 12 938 bp Feature: gene Location: 213064-213981 bp Ori: OEJ36717.1 Feature: domain Description: PHA02517 Location: 213124-213934 bp Feature: domain Description: PHA02 517 Location: 2 1312 4-2 13934 bp Feature: gene Location: 213978-214286 bp Ori: OEJ36718.1 Feature: domain Description: InsE Location: 213993-214263 bp Feature: domain Description: InsE Location: 2 13993-2 142 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PnbA (COG2272), Tra8 (COG2826), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), AAA_16 (pfam13191), TPR_10 (pfam13374), AbiEi_4 (pfam13338), COG3293 (Transposase )
COG3464 (Transposase ), nicotinamidase_related (cd01014), Intron_maturas2 (pfam01348), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)