myRT

myRT report for GCA_001748265.1_ASM174826v1

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Seq: BDGS01000001.1 Pseudomonas humi DNA, contig: contig00001, whole genome shotgun sequence (6935186 bp)
Overview 1 RT 1: 1421742-1430622 bp 2 RT 2: 1447240-1457166 bp Neighborhood of RT #1 [1421742, 1430630] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [1447240, 1457228] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK11359 PAS PRK11359 RVT_N RVT-GII YkfC HNH int INT_Rci_Hp1_C Feature: gene Location: 1421742-1422416 bp Feature: domain Description: NTP_transferase_like_1 Location: 1421748-1422390 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 421 748-1 422390 bp Feature: gene Location: 1422413-1423429 bp Feature: domain Description: COG3178 Location: 1422419-1423412 bp Feature: domain Description: COG31 78 Location: 1 42241 9-1 42341 2 bp Feature: gene Location: 1424702-1426414 bp Feature: RT Description: RVT_N Location: 1424759-1425002 bp Feature: RT Description: RVT_N Location: 1 424759-1 425002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1425047-1425683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 425047-1 425683 bp Feature: domain Description: YkfC Location: 1425893-1426043 bp Feature: domain Description: YkfC Location: 1 425893-1 426043 bp Feature: domain Description: HNH Note: nucleases Location: 1426220-1426358 bp Feature: domain Description: HNH Note: nucleases Location: 1 426220-1 426358 bp Feature: gene Location: 1426592-1429357 bp Feature: domain Description: LptD Location: 1426913-1429343 bp Feature: domain Description: LptD Location: 1 42691 3-1 429343 bp Feature: gene Location: 1429374-1430630 bp Feature: domain Description: PRK10770 Location: 1429428-1430622 bp Feature: domain Description: PRK1 0770 Location: 1 429428-1 430622 bp Feature: gene Location: 1447240-1449090 bp Feature: domain Description: PRK05658 Location: 1447252-1449088 bp Feature: domain Description: PRK05658 Location: 1 447252-1 449088 bp Feature: gene Location: 1449210-1452944 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1449312-1449969 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 44931 2-1 449969 bp Feature: domain Description: PRK09776 Location: 1450086-1450506 bp Feature: domain Description: PRK09776 Location: 1 450086-1 450506 bp Feature: domain Description: PAS Location: 1450524-1450719 bp Feature: domain Description: PAS Location: 1 450524-1 45071 9 bp Feature: domain Description: PRK11359 Location: 1450737-1451247 bp Feature: domain Description: PRK1 1 359 Location: 1 450737-1 451 247 bp Feature: domain Description: PAS Location: 1451268-1451589 bp Feature: domain Description: PAS Location: 1 451 268-1 451 589 bp Feature: domain Description: PRK11359 Location: 1451616-1452885 bp Feature: domain Description: PRK1 1 359 Location: 1 451 61 6-1 452885 bp Feature: gene Location: 1454168-1455874 bp Feature: RT Description: RVT_N Location: 1454225-1454468 bp Feature: RT Description: RVT_N Location: 1 454225-1 454468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454513-1455149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45451 3-1 4551 49 bp Feature: domain Description: YkfC Location: 1455344-1455503 bp Feature: domain Description: YkfC Location: 1 455344-1 455503 bp Feature: domain Description: HNH Note: nucleases Location: 1455686-1455824 bp Feature: domain Description: HNH Note: nucleases Location: 1 455686-1 455824 bp Feature: gene Location: 1456157-1456801 bp Feature: domain Description: int Location: 1456181-1456799 bp Feature: domain Description: int Location: 1 4561 81 -1 456799 bp Feature: gene Location: 1456809-1457228 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1456815-1457166 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 45681 5-1 4571 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), int (PHA02601), INT_Rci_Hp1_C (cd00796)