myRT

myRT report for GCA_001748545.1_ASM174854v1

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Seq: MIVK01000067.1 Escherichia coli strain VL2790 contig_0067, whole genome shotgun sequence (8662 bp)
Overview 1 RT 1: 1-6428 bp Neighborhood of RT #1 [1, 6457] AidA autotrans_barl DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 1-2517 bp Feature: domain Description: AidA Location: 40-760 bp Feature: domain Description: AidA Location: 40-760 bp Feature: domain Description: autotrans_barl Location: 1192-2515 bp Feature: domain Description: autotrans_barl Location: 1 1 92-251 5 bp Feature: gene Location: 2695-2886 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2752-2863 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2752-2863 bp Feature: gene Location: 2957-4189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3158-3812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 58-381 2 bp Feature: domain Description: GIIM Note: maturase Location: 3890-4112 bp Feature: domain Description: GIIM Note: maturase Location: 3890-41 1 2 bp Feature: gene Location: 4651-6090 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4789-5014 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4789-501 4 bp Feature: domain Description: zf-IS66 Location: 5035-5167 bp Feature: domain Description: zf-IS66 Location: 5035-51 67 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5212-6049 bp Feature: domain Description: DDE_Tnp_IS66 Location: 521 2-6049 bp Feature: gene Location: 6110-6457 bp Feature: domain Description: TnpB_IS66 Location: 6137-6428 bp Feature: domain Description: TnpB_IS66 Location: 61 37-6428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AidA (COG3468), autotrans_barl (TIGR01414), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)