myRT

myRT report for GCA_001748605.1_ASM174860v1

Download annotations/find similar RTs

Seq: MIVL01000044.1 Escherichia coli strain VL2810 contig_0044, whole genome shotgun sequence (81768 bp)
Overview 1 RT 1: 60182-64318 bp Neighborhood of RT #1 [60182, 64431] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 60182-60709 bp Feature: domain Description: PRK13732 Location: 60185-60707 bp Feature: domain Description: PRK1 3732 Location: 601 85-60707 bp Feature: gene Location: 60656-61162 bp Feature: gene Location: 61876-63543 bp Feature: RT Description: RVT_N Location: 61924-62161 bp Feature: RT Description: RVT_N Location: 61 924-621 61 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62212-62854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6221 2-62854 bp Feature: domain Description: GIIM Note: maturase Location: 62905-63139 bp Feature: domain Description: GIIM Note: maturase Location: 62905-631 39 bp Feature: domain Description: HNHc Note: nucleases Location: 63349-63508 bp Feature: domain Description: HNHc Note: nucleases Location: 63349-63508 bp Feature: gene Location: 63821-64012 bp Feature: gene Location: 64012-64431 bp Feature: domain Description: DUF1380 Location: 64015-64318 bp Feature: domain Description: DUF1 380 Location: 6401 5-6431 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MIVL01000019.1 Escherichia coli strain VL2810 contig_0019, whole genome shotgun sequence (178418 bp)
Overview 1 RT 1: 9506-15782 bp Neighborhood of RT #1 [9506, 15782] P Q RVT-Retrons ComFC Feature: gene Location: 9506-11272 bp Feature: domain Description: P Location: 9533-11267 bp Feature: domain Description: P Location: 9533-112 67 bp Feature: gene Location: 11272-12306 bp Feature: domain Description: Q Location: 11281-12298 bp Feature: domain Description: Q Location: 112 81-12 2 98 bp Feature: gene Location: 12351-14111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12495-13119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 495-13119 bp Feature: gene Location: 14641-15222 bp Feature: domain Description: ComFC Location: 14782-15211 bp Feature: domain Description: ComFC Location: 14782 -152 11 bp Feature: gene Location: 15225-15782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, ComFC (COG1040), P (PHA02535)