myRT

myRT report for GCA_001748615.1_ASM174861v1

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Seq: MIVO01000053.1 Escherichia coli strain VL2984 contig_0053, whole genome shotgun sequence (15571 bp)
Overview 1 RT 1: 5801-10106 bp Neighborhood of RT #1 [5801, 10106] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5801-6034 bp Ori: OEL63394.1 Feature: domain Description: DUF905 Location: 5831-6029 bp Feature: domain Description: DUF905 Location: 5831 -6029 bp Feature: gene Location: 6097-6594 bp Ori: OEL63395.1 Feature: domain Description: PRK13732 Location: 6100-6592 bp Feature: domain Description: PRK1 3732 Location: 61 00-6592 bp Feature: gene Location: 6744-8645 bp Ori: OEL63396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7011-7842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 1 -7842 bp Feature: domain Description: Intron_maturas2 Location: 7956-8214 bp Feature: domain Description: Intron_maturas2 Location: 7956-821 4 bp Feature: domain Description: HNHc Note: nucleases Location: 8388-8550 bp Feature: domain Description: HNHc Note: nucleases Location: 8388-8550 bp Feature: gene Location: 9323-9529 bp Feature: gene Location: 9599-10106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MIVO01000002.1 Escherichia coli strain VL2984 contig_0002, whole genome shotgun sequence (86604 bp)
Overview 1 RT 1: 74906-79723 bp Neighborhood of RT #1 [74906, 79815] PRK09692 SLATT_5 RVT-UG17 Psu PRK09678 PRK09678 Feature: gene Location: 74906-76084 bp Ori: OEL72401.1 Feature: domain Description: PRK09692 Location: 74915-76067 bp Feature: domain Description: PRK09692 Location: 74915-76067 bp Feature: gene Location: 76101-76742 bp Ori: OEL72412.1 Feature: domain Description: SLATT_5 Location: 76104-76710 bp Feature: domain Description: SLATT_5 Location: 76104-76710 bp Feature: gene Location: 76937-78346 bp Ori: OEL72402.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 77174-77786 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 77174-77786 bp Feature: gene Location: 78669-79241 bp Ori: OEL72403.1 Feature: domain Description: Psu Location: 78687-79224 bp Feature: domain Description: Psu Location: 78687-792 2 4 bp Feature: gene Location: 79315-79815 bp Ori: OEL72404.1 Feature: domain Description: PRK09678 Location: 79318-79450 bp Feature: domain Description: PRK09678 Location: 79318-79450 bp Feature: domain Description: PRK09678 Location: 79573-79723 bp Feature: domain Description: PRK09678 Location: 79573-7972 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)