myRT

myRT report for GCA_001749145.1_ASM174914v1

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Seq: MIWR01000015.1 Escherichia coli strain VL21 contig_0015, whole genome shotgun sequence (111096 bp)
Overview 1 RT 1: 91708-98086 bp Neighborhood of RT #1 [91708, 98106] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 91708-92664 bp Ori: OEN01457.1 Feature: domain Description: XdhC Location: 91786-92641 bp Feature: domain Description: XdhC Location: 91 786-92641 bp Feature: gene Location: 92643-93053 bp Ori: OEN01458.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 92715-93027 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 9271 5-93027 bp Feature: gene Location: 93596-95614 bp Ori: OEN01459.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 94169-94622 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 941 69-94622 bp Feature: gene Location: 95605-96882 bp Ori: OEN01460.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 95893-96388 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 95893-96388 bp Feature: gene Location: 97277-97549 bp Ori: OEN01461.1 Feature: domain Description: PRK09678 Location: 97286-97451 bp Feature: domain Description: PRK09678 Location: 97286-97451 bp Feature: gene Location: 97555-98106 bp Ori: OEN01462.1 Feature: domain Description: Psu Location: 97576-98086 bp Feature: domain Description: Psu Location: 97576-98086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: MIWR01000006.1 Escherichia coli strain VL21 contig_0006, whole genome shotgun sequence (546609 bp)
Overview 1 RT 1: 528584-535955 bp Neighborhood of RT #1 [528584, 535969] DUF5405 Phage_GPA RVT-AbiP2 Q P Feature: gene Location: 528584-528859 bp Ori: OEN03996.1 Feature: domain Description: DUF5405 Location: 528602-528842 bp Feature: domain Description: DUF5405 Location: 52 8602 -52 8842 bp Feature: gene Location: 528849-531134 bp Ori: OEN03997.1 Feature: domain Description: Phage_GPA Location: 529248-530235 bp Feature: domain Description: Phage_GPA Location: 52 92 48-5302 35 bp Feature: gene Location: 531238-532785 bp Ori: OEN04036.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 531655-532108 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 531655-532 108 bp Feature: gene Location: 533163-534197 bp Ori: OEN03998.1 Feature: domain Description: Q Location: 533166-534189 bp Feature: domain Description: Q Location: 533166-534189 bp Feature: gene Location: 534197-535969 bp Ori: OEN03999.1 Feature: domain Description: P Location: 534224-535955 bp Feature: domain Description: P Location: 5342 2 4-535955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536), P (PHA02535)

Seq: MIWR01000009.1 Escherichia coli strain VL21 contig_0009, whole genome shotgun sequence (258633 bp)
Overview 1 RT 1: 857-3599 bp Neighborhood of RT #1 [857, 3599] PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 857-1087 bp Ori: OEN02708.1 Feature: domain Description: PHA02517 Location: 860-1079 bp Feature: domain Description: PHA02517 Location: 860-1079 bp Feature: gene Location: 1133-1249 bp Feature: domain Description: PHA02517 Location: 1139-1250 bp Feature: domain Description: PHA02517 Location: 113 9-1250 bp Feature: gene Location: 1414-2922 bp Ori: OEN02709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672-2404 bp Feature: domain Description: GIIM Note: maturase Location: 2479-2677 bp Feature: domain Description: GIIM Note: maturase Location: 2479-2677 bp Feature: gene Location: 2891-3316 bp Feature: gene Location: 3231-3599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)