myRT

myRT report for GCA_001749665.1_ASM174966v1

Download annotations/find similar RTs

Seq: MIXK01000015.1 Escherichia coli strain VL2729-1 contig_0015, whole genome shotgun sequence (81922 bp)
Overview 1 RT 1: 1988-6879 bp Neighborhood of RT #1 [1988, 6896] PRK09678 PRK09678 Psu RVT-UG17 SLATT_5 PRK09692 Feature: gene Location: 1988-2488 bp Ori: OEN96539.1 Feature: domain Description: PRK09678 Location: 1991-2123 bp Feature: domain Description: PRK09678 Location: 1 991 -21 23 bp Feature: domain Description: PRK09678 Location: 2246-2396 bp Feature: domain Description: PRK09678 Location: 2246-2396 bp Feature: gene Location: 2562-3134 bp Ori: OEN96540.1 Feature: domain Description: Psu Location: 2580-3117 bp Feature: domain Description: Psu Location: 2580-31 1 7 bp Feature: gene Location: 3457-4865 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3694-4018 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3694-401 8 bp Feature: gene Location: 5060-5701 bp Ori: OEN96610.1 Feature: domain Description: SLATT_5 Location: 5063-5669 bp Feature: domain Description: SLATT_5 Location: 5063-5669 bp Feature: gene Location: 5718-6896 bp Ori: OEN96541.1 Feature: domain Description: PRK09692 Location: 5727-6879 bp Feature: domain Description: PRK09692 Location: 5727-6879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: MIXK01000026.1 Escherichia coli strain VL2729-1 contig_0026, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Ori: OEN94098.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-12 47 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)