myRT

myRT report for GCA_001749675.1_ASM174967v1

Download annotations/find similar RTs

Seq: MIXL01000067.1 Escherichia coli strain VL2738 contig_0069, whole genome shotgun sequence (15544 bp)
Overview 1 RT 1: 5801-10112 bp Neighborhood of RT #1 [5801, 10112] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5801-6034 bp Ori: OEN90266.1 Feature: domain Description: DUF905 Location: 5831-6029 bp Feature: domain Description: DUF905 Location: 5831 -6029 bp Feature: gene Location: 6097-6594 bp Ori: OEN90267.1 Feature: domain Description: PRK13732 Location: 6100-6592 bp Feature: domain Description: PRK1 3732 Location: 61 00-6592 bp Feature: gene Location: 6744-8645 bp Ori: OEN90268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7011-7842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 1 -7842 bp Feature: domain Description: Intron_maturas2 Location: 7956-8214 bp Feature: domain Description: Intron_maturas2 Location: 7956-821 4 bp Feature: domain Description: HNHc Note: nucleases Location: 8388-8550 bp Feature: domain Description: HNHc Note: nucleases Location: 8388-8550 bp Feature: gene Location: 9323-9529 bp Feature: gene Location: 9599-10112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MIXL01000014.1 Escherichia coli strain VL2738 contig_0014, whole genome shotgun sequence (65008 bp)
Overview 1 RT 1: 59858-64675 bp Neighborhood of RT #1 [59858, 64767] PRK09692 SLATT_5 RVT-UG17 Psu PRK09678 PRK09678 Feature: gene Location: 59858-61036 bp Ori: OEN97667.1 Feature: domain Description: PRK09692 Location: 59867-61019 bp Feature: domain Description: PRK09692 Location: 59867-61019 bp Feature: gene Location: 61053-61694 bp Ori: OEN97672.1 Feature: domain Description: SLATT_5 Location: 61056-61662 bp Feature: domain Description: SLATT_5 Location: 61056-61662 bp Feature: gene Location: 61889-63298 bp Ori: OEN97668.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 62126-62738 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 62 12 6-62 738 bp Feature: gene Location: 63621-64193 bp Ori: OEN97669.1 Feature: domain Description: Psu Location: 63639-64176 bp Feature: domain Description: Psu Location: 63639-64176 bp Feature: gene Location: 64267-64767 bp Ori: OEN97670.1 Feature: domain Description: PRK09678 Location: 64270-64402 bp Feature: domain Description: PRK09678 Location: 642 70-64402 bp Feature: domain Description: PRK09678 Location: 64525-64675 bp Feature: domain Description: PRK09678 Location: 6452 5-64675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)