myRT

myRT report for GCA_001749735.1_ASM174973v1

Download annotations/find similar RTs

Seq: MKEP01000001.1 Pseudomonas sp. J237 Contig_1, whole genome shotgun sequence (69540 bp)
Overview 1 RT 1: 13738-19808 bp Neighborhood of RT #1 [13738, 19840] Phage_int_SAM_1 INT_RitC_C_like GIIM RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 13738-14748 bp Feature: domain Description: Phage_int_SAM_1 Location: 13795-14038 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 3795-1 4038 bp Feature: domain Description: INT_RitC_C_like Location: 14134-14671 bp Feature: domain Description: INT_RitC_C_like Location: 1 41 34-1 4671 bp Feature: gene Location: 14971-15534 bp Feature: domain Description: GIIM Note: maturase Location: 15016-15127 bp Feature: domain Description: GIIM Note: maturase Location: 1 501 6-1 51 27 bp Feature: gene Location: 15738-17510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16452-17142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6452-1 71 42 bp Feature: gene Location: 17664-18911 bp Feature: domain Description: Phage_int_SAM_1 Location: 18033-18279 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 8033-1 8279 bp Feature: domain Description: INT_RitA_C_like Location: 18360-18888 bp Feature: domain Description: INT_RitA_C_like Location: 1 8360-1 8888 bp Feature: gene Location: 18908-19840 bp Feature: domain Description: INT_RitB_C_like Location: 19220-19808 bp Feature: domain Description: INT_RitB_C_like Location: 1 9220-1 9808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), GIIM (pfam08388), RVT-GII, INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: MKEP01000030.1 Pseudomonas sp. J237 Contig_4, whole genome shotgun sequence (257202 bp)
Overview 1 RT 1: 55025-62430 bp Neighborhood of RT #1 [55025, 62528] RVT-GII group_II_RT_mat HNHc SLR SLR Feature: gene Location: 55025-55951 bp Feature: gene Location: 55953-56279 bp Feature: gene Location: 57105-58937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57372-58170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57372 -58170 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58377-58512 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58377-58512 bp Feature: domain Description: HNHc Note: nucleases Location: 58725-58866 bp Feature: domain Description: HNHc Note: nucleases Location: 5872 5-58866 bp Feature: gene Location: 60290-61105 bp Feature: gene Location: 61431-62528 bp Feature: domain Description: SLR Location: 61728-62115 bp Feature: domain Description: SLR Location: 6172 8-62 115 bp Feature: domain Description: SLR Location: 62154-62430 bp Feature: domain Description: SLR Location: 62 154-62 430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), SLR (sd00010)