myRT

myRT report for GCA_001750645.1_ASM175064v1

Download annotations/find similar RTs

Seq: MEIF01000111.1 Gammaproteobacteria bacterium AqS3 AqS3_scaffold_110, whole genome shotgun sequence (4571 bp)
Overview 1 RT 1: 709-4570 bp Neighborhood of RT #1 [709, 4570] COG4584 PRK06526 RVT-GII IS285 Feature: gene Location: 709-1182 bp Feature: domain Description: COG4584 Location: 715-1027 bp Feature: domain Description: COG4584 Location: 71 5-1 027 bp Feature: gene Location: 1179-1979 bp Feature: domain Description: PRK06526 Location: 1227-1926 bp Feature: domain Description: PRK06526 Location: 1 227-1 926 bp Feature: gene Location: 2088-3161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-3048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-3048 bp Feature: gene Location: 3181-4383 bp Feature: domain Description: IS285 Location: 3235-4366 bp Feature: domain Description: IS285 Location: 3235-4366 bp Feature: gene Location: 4361-4570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT-GII, IS285 (COG3328)

Seq: MEIF01000035.1 Gammaproteobacteria bacterium AqS3 AqS3_scaffold_35, whole genome shotgun sequence (22867 bp)
Overview 1 RT 1: 13734-18557 bp Neighborhood of RT #1 [13734, 18557] DUF4917 DUF4917 RVT-UG15 DUF1863 Feature: gene Location: 13734-15110 bp Feature: domain Description: DUF4917 Location: 13803-14301 bp Feature: domain Description: DUF4917 Location: 13803-14301 bp Feature: domain Description: DUF4917 Location: 14586-14964 bp Feature: domain Description: DUF4917 Location: 14586-14964 bp Feature: gene Location: 15215-15364 bp Feature: gene Location: 15493-17076 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 15919-16318 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 15919-16318 bp Feature: gene Location: 17306-18115 bp Feature: domain Description: DUF1863 Location: 17315-17825 bp Feature: domain Description: DUF1863 Location: 17315-1782 5 bp Feature: gene Location: 18078-18557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), RVT-UG15, DUF1863 (pfam08937)

Seq: MEIF01000039.1 Gammaproteobacteria bacterium AqS3 AqS3_scaffold_39, whole genome shotgun sequence (21237 bp)
Overview 1 RT 1: 1-5293 bp Neighborhood of RT #1 [1, 5293] KOG1515 RVT-UG15 Dcm Feature: gene Location: 1-210 bp Feature: domain Description: KOG1515 Location: 4-172 bp Feature: domain Description: KOG1515 Location: 4-172 bp Feature: gene Location: 307-1644 bp Feature: gene Location: 1725-3377 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2151-2547 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2151-2547 bp Feature: gene Location: 3632-4726 bp Feature: domain Description: Dcm Location: 3635-4676 bp Feature: domain Description: Dcm Location: 3 63 5-4676 bp Feature: gene Location: 5027-5293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1515 (KOG1515, Arylacetamide deacetylase ), RVT-UG15, Dcm (COG0270)