myRT

myRT report for GCA_001753875.1_ASM175387v1

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Seq: BCAR01000004.1 Pseudomonas sp. GTC 16481 DNA, contig: PMO06_CON00004, whole genome shotgun sequence (127170 bp)
Overview 1 RT 1: 73538-81811 bp Neighborhood of RT #1 [73538, 81861] PilN PilM RVT_N RVT-GII GIIM HNH MrcA PRK07232 Feature: gene Location: 73538-74074 bp Feature: domain Description: PilN Location: 73541-74024 bp Feature: domain Description: PilN Location: 73541 -74024 bp Feature: gene Location: 74071-75006 bp Feature: domain Description: PilM Location: 74128-74662 bp Feature: domain Description: PilM Location: 741 28-74662 bp Feature: gene Location: 76140-77846 bp Feature: RT Description: RVT_N Location: 76197-76440 bp Feature: RT Description: RVT_N Location: 761 97-76440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76485-77121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76485-771 21 bp Feature: domain Description: GIIM Note: maturase Location: 77172-77406 bp Feature: domain Description: GIIM Note: maturase Location: 771 72-77406 bp Feature: domain Description: HNH Note: nucleases Location: 77658-77796 bp Feature: domain Description: HNH Note: nucleases Location: 77658-77796 bp Feature: gene Location: 77900-80428 bp Feature: domain Description: MrcA Location: 77981-80351 bp Feature: domain Description: MrcA Location: 77981 -80351 bp Feature: gene Location: 80584-81861 bp Feature: domain Description: PRK07232 Location: 80602-81811 bp Feature: domain Description: PRK07232 Location: 80602-81 81 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilN (pfam05137), PilM (pfam07419), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed)

Seq: BCAR01000056.1 Pseudomonas sp. GTC 16481 DNA, contig: PMO06_CON00056, whole genome shotgun sequence (33425 bp)
Overview 1 RT 1: 164-3322 bp Neighborhood of RT #1 [164, 3322] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 164-736 bp Feature: domain Description: DUF1566 Location: 494-722 bp Feature: domain Description: DUF1566 Location: 494-72 2 bp Feature: gene Location: 789-1142 bp Feature: domain Description: Avd_like Location: 816-1122 bp Feature: domain Description: Avd_like Location: 816-112 2 bp Feature: gene Location: 1341-2498 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1590-2274 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1590-2 2 74 bp Feature: gene Location: 2580-3185 bp Feature: gene Location: 3191-3322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF1566 (pfam07603), Avd_like (cd16376)