myRT

myRT report for GCA_001753935.1_ASM175393v1

Download annotations/find similar RTs

Seq: BCBC01000003.1 Pseudomonas sp. NBRC 111126 DNA, contig: PPU11_CON00003, whole genome shotgun sequence (127009 bp)
Overview 1 RT 1: 45300-53573 bp Neighborhood of RT #1 [45300, 53623] PRK07232 MrcA RVT_N RVT-GII GIIM HNH PilM PilN Feature: gene Location: 45300-46577 bp Feature: domain Description: PRK07232 Location: 45318-46527 bp Feature: domain Description: PRK07232 Location: 4531 8-46527 bp Feature: gene Location: 46733-49261 bp Feature: domain Description: MrcA Location: 46814-49184 bp Feature: domain Description: MrcA Location: 4681 4-491 84 bp Feature: gene Location: 49315-51021 bp Feature: RT Description: RVT_N Location: 49372-49615 bp Feature: RT Description: RVT_N Location: 49372-4961 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49660-50296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49660-50296 bp Feature: domain Description: GIIM Note: maturase Location: 50347-50581 bp Feature: domain Description: GIIM Note: maturase Location: 50347-50581 bp Feature: domain Description: HNH Note: nucleases Location: 50833-50971 bp Feature: domain Description: HNH Note: nucleases Location: 50833-50971 bp Feature: gene Location: 52155-53090 bp Feature: domain Description: PilM Location: 52212-52746 bp Feature: domain Description: PilM Location: 5221 2-52746 bp Feature: gene Location: 53087-53623 bp Feature: domain Description: PilN Location: 53090-53573 bp Feature: domain Description: PilN Location: 53090-53573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PilM (pfam07419), PilN (pfam05137)

Seq: BCBC01000022.1 Pseudomonas sp. NBRC 111126 DNA, contig: PPU11_CON00022, whole genome shotgun sequence (67970 bp)
Overview 1 RT 1: 26260-29404 bp Neighborhood of RT #1 [26260, 29418] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 26260-26391 bp Feature: gene Location: 26397-27002 bp Feature: gene Location: 27084-28241 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27333-28017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 7333-2 8017 bp Feature: gene Location: 28440-28793 bp Feature: domain Description: Avd_like Location: 28467-28773 bp Feature: domain Description: Avd_like Location: 2 8467-2 8773 bp Feature: gene Location: 28846-29418 bp Feature: domain Description: DUF1566 Location: 29176-29404 bp Feature: domain Description: DUF1566 Location: 2 9176-2 9404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: BCBC01000036.1 Pseudomonas sp. NBRC 111126 DNA, contig: PPU11_CON00036, whole genome shotgun sequence (49633 bp)
Overview 1 RT 1: 177-5537 bp Neighborhood of RT #1 [177, 5537] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 177-1712 bp Feature: domain Description: LZ_Tnp_IS66 Location: 285-498 bp Feature: domain Description: LZ_Tnp_IS66 Location: 285-498 bp Feature: domain Description: zf-IS66 Location: 528-651 bp Feature: domain Description: zf-IS66 Location: 528-651 bp Feature: domain Description: DDE_Tnp_IS66 Location: 696-1551 bp Feature: domain Description: DDE_Tnp_IS66 Location: 696-1551 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1572-1686 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1572-1686 bp Feature: gene Location: 2020-3612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524-3214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524-3 214 bp Feature: gene Location: 3738-3965 bp Feature: gene Location: 4167-5537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII