myRT

myRT report for GCA_001756285.1_ASM175628v1

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Seq: MAQZ01000046.1 Frankia sp. CgIM4 contig_18, whole genome shotgun sequence (141096 bp)
Overview 1 RT 1: 1-4718 bp Neighborhood of RT #1 [1, 4718] DDE_Tnp_1 RVT-GII Feature: gene Location: 1-440 bp Ori: OFB44325.1 Feature: domain Description: DDE_Tnp_1 Location: 25-406 bp Feature: domain Description: DDE_Tnp_1 Location: 25-406 bp Feature: gene Location: 1434-2711 bp Ori: OFB44230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833-2523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 833-2523 bp Feature: gene Location: 3276-3720 bp Feature: gene Location: 4275-4718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: MAQZ01000077.1 Frankia sp. CgIM4 contig_46, whole genome shotgun sequence (52820 bp)
Overview 1 RT 1: 23965-29765 bp Neighborhood of RT #1 [23965, 29767] Methyltransf_19 FldA RVT-GII GIIM HTH_ARSR PRK07819 PRK07819 Feature: gene Location: 23965-24783 bp Ori: OFB41858.1 Feature: domain Description: Methyltransf_19 Location: 23992-24775 bp Feature: domain Description: Methyltransf_19 Location: 2 3992 -2 4775 bp Feature: gene Location: 25284-25838 bp Ori: OFB41873.1 Feature: domain Description: FldA Location: 25287-25467 bp Feature: domain Description: FldA Location: 2 52 87-2 5467 bp Feature: gene Location: 25923-26678 bp Ori: OFB41859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26013-26298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6013-2 62 98 bp Feature: domain Description: GIIM Note: maturase Location: 26379-26583 bp Feature: domain Description: GIIM Note: maturase Location: 2 6379-2 6583 bp Feature: gene Location: 27640-27984 bp Ori: OFB41860.1 Feature: domain Description: HTH_ARSR Location: 27655-27868 bp Feature: domain Description: HTH_ARSR Location: 2 7655-2 7868 bp Feature: gene Location: 27989-29767 bp Ori: OFB41861.1 Feature: domain Description: PRK07819 Location: 28013-28847 bp Feature: domain Description: PRK07819 Location: 2 8013-2 8847 bp Feature: domain Description: PRK07819 Location: 28928-29765 bp Feature: domain Description: PRK07819 Location: 2 892 8-2 9765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_19 (pfam04672), FldA (COG0716), RVT-GII, GIIM (pfam08388), HTH_ARSR (smart00418), PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated)

Seq: MAQZ01000110.1 Frankia sp. CgIM4 contig_76, whole genome shotgun sequence (20085 bp)
Overview 1 RT 1: 931-3494 bp Neighborhood of RT #1 [931, 3523] RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_4 Feature: gene Location: 931-1134 bp Feature: gene Location: 1144-1518 bp Feature: gene Location: 1523-2113 bp Ori: OFB39674.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1529-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1529-1664 bp Feature: domain Description: GIIM Note: maturase Location: 1733-1958 bp Feature: domain Description: GIIM Note: maturase Location: 173 3 -1958 bp Feature: gene Location: 2539-2739 bp Ori: OFB39675.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 2593-2704 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2593 -2704 bp Feature: gene Location: 2768-3523 bp Ori: OFB39676.1 Feature: domain Description: DDE_Tnp_4 Location: 3020-3494 bp Feature: domain Description: DDE_Tnp_4 Location: 3 020-3 494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_4 (pfam13359)

Seq: MAQZ01000121.1 Frankia sp. CgIM4 contig_86, whole genome shotgun sequence (13213 bp)
Overview 1 RT 1: 1-2190 bp Neighborhood of RT #1 [1, 2195] RVT-GII GIIM PRK11409 YoeB_toxin Feature: gene Location: 1-575 bp Feature: gene Location: 602-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-833 bp Feature: domain Description: GIIM Note: maturase Location: 920-1127 bp Feature: domain Description: GIIM Note: maturase Location: 920-1127 bp Feature: gene Location: 1681-1938 bp Ori: OFB38897.1 Feature: domain Description: PRK11409 Location: 1693-1918 bp Feature: domain Description: PRK114 09 Location: 1693-1918 bp Feature: gene Location: 1935-2195 bp Ori: OFB38888.1 Feature: domain Description: YoeB_toxin Location: 1950-2190 bp Feature: domain Description: YoeB_toxin Location: 1950-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM), YoeB_toxin (pfam06769)

Seq: MAQZ01000075.1 Frankia sp. CgIM4 contig_44, whole genome shotgun sequence (57791 bp)
Overview 1 RT 1: 26112-31559 bp Neighborhood of RT #1 [26112, 31559] KOG2565 PIN_MtVapC27-VapC40_like RVT-GII GIIM Feature: gene Location: 26112-27371 bp Ori: OFB41999.1 Feature: domain Description: KOG2565 Location: 26169-27345 bp Feature: domain Description: KOG25 65 Location: 26169-27345 bp Feature: gene Location: 27559-27771 bp Ori: OFB42000.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 27625-27754 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 27625 -2775 4 bp Feature: gene Location: 27940-29316 bp Ori: OFB42001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28255-28885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825 5 -28885 bp Feature: domain Description: GIIM Note: maturase Location: 28972-29176 bp Feature: domain Description: GIIM Note: maturase Location: 28972-29176 bp Feature: gene Location: 30085-31221 bp Feature: gene Location: 31215-31559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), PIN_MtVapC27-VapC40_like (cd18681), RVT-GII, GIIM (pfam08388)