myRT

myRT report for GCA_001756405.1_ASM175640v1

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Seq: LZQI01000006.1 Pseudomonas aeruginosa strain Br993 scaffold14.1, whole genome shotgun sequence (184422 bp)
Overview 1 RT 1: 177602-184126 bp Neighborhood of RT #1 [177602, 184422] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 177602-178513 bp Ori: OFC02785.1 Feature: domain Description: COG4271 Location: 177827-178496 bp Feature: domain Description: COG4271 Location: 1 77827-1 78496 bp Feature: gene Location: 178594-180138 bp Ori: OFC02772.1 Feature: domain Description: CHD Location: 178810-179224 bp Feature: domain Description: CHD Location: 1 7881 0-1 79224 bp Feature: domain Description: CHD Location: 179452-179941 bp Feature: domain Description: CHD Location: 1 79452-1 79941 bp Feature: gene Location: 182133-183401 bp Ori: OFC02773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182346-183003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 82346-1 83003 bp Feature: domain Description: GIIM Note: maturase Location: 183081-183303 bp Feature: domain Description: GIIM Note: maturase Location: 1 83081 -1 83303 bp Feature: gene Location: 183790-184422 bp Ori: OFC02774.1 Feature: domain Description: DUF772 Location: 183931-184126 bp Feature: domain Description: DUF772 Location: 1 83931 -1 841 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LZQI01000008.1 Pseudomonas aeruginosa strain Br993 scaffold16.1, whole genome shotgun sequence (173005 bp)
Overview 1 RT 1: 81014-86698 bp Neighborhood of RT #1 [81014, 86703] SdhE RVT_N RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 81014-81466 bp Feature: gene Location: 81450-81704 bp Ori: OFC02318.1 Feature: domain Description: SdhE Location: 81456-81696 bp Feature: domain Description: SdhE Location: 81456-81696 bp Feature: gene Location: 81780-83501 bp Ori: OFC02319.1 Feature: domain Description: RVT_N Location: 81837-82074 bp Feature: domain Description: RVT_N Location: 81837-82 074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82125-82761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 12 5-82 761 bp Feature: domain Description: YkfC Location: 82959-83115 bp Feature: domain Description: YkfC Location: 82 959-83115 bp Feature: domain Description: HNH Note: nucleases Location: 83298-83436 bp Feature: domain Description: HNH Note: nucleases Location: 832 98-83436 bp Feature: gene Location: 84822-85766 bp Ori: OFC02320.1 Feature: domain Description: YgfZ Location: 84831-85731 bp Feature: domain Description: YgfZ Location: 84831-85731 bp Feature: gene Location: 85867-86703 bp Ori: OFC02321.1 Feature: domain Description: HDOD Location: 85870-86698 bp Feature: domain Description: HDOD Location: 85870-86698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: LZQI01000016.1 Pseudomonas aeruginosa strain Br993 scaffold23.1, whole genome shotgun sequence (112673 bp)
Overview 1 RT 1: 27665-38004 bp 2 RT 2: 54262-63082 bp Neighborhood of RT #1 [27665, 38006] HTH_XRE RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [54262, 63111] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 27665-27907 bp Feature: gene Location: 28001-28237 bp Ori: OFB99851.1 Feature: domain Description: HTH_XRE Location: 28019-28136 bp Feature: domain Description: HTH_XRE Location: 28019-2813 6 bp Feature: gene Location: 29543-31228 bp Ori: OFB99852.1 Feature: domain Description: RVT_N Location: 29600-29840 bp Feature: domain Description: RVT_N Location: 29600-29840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29888-30524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29888-3 0524 bp Feature: domain Description: GIIM Note: maturase Location: 30578-30809 bp Feature: domain Description: GIIM Note: maturase Location: 3 0578-3 0809 bp Feature: domain Description: HNH Note: nucleases Location: 31061-31199 bp Feature: domain Description: HNH Note: nucleases Location: 3 1061-3 1199 bp Feature: gene Location: 32309-36046 bp Ori: OFB99853.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 32417-33074 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3 2417-3 3 074 bp Feature: domain Description: PRK09776 Location: 33287-33758 bp Feature: domain Description: PRK09776 Location: 3 3 287-3 3 758 bp Feature: domain Description: PAS Location: 33815-34340 bp Feature: domain Description: PAS Location: 3 3 815-3 43 40 bp Feature: domain Description: PRK10060 Location: 34352-35996 bp Feature: domain Description: PRK10060 Location: 3 43 52-3 5996 bp Feature: gene Location: 36153-38006 bp Ori: OFB99854.1 Feature: domain Description: PRK05658 Location: 36165-38004 bp Feature: domain Description: PRK05658 Location: 3 6165-3 8004 bp Feature: gene Location: 54262-55554 bp Ori: OFB99872.1 Feature: domain Description: PRK10770 Location: 54352-55546 bp Feature: domain Description: PRK10770 Location: 543 52-55546 bp Feature: gene Location: 55535-58306 bp Ori: OFB99873.1 Feature: domain Description: LptD Location: 55730-58292 bp Feature: domain Description: LptD Location: 5573 0-58292 bp Feature: gene Location: 58439-60151 bp Ori: OFB99874.1 Feature: domain Description: RVT_N Location: 58496-58739 bp Feature: domain Description: RVT_N Location: 58496-5873 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58784-59420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58784-59420 bp Feature: domain Description: YkfC Location: 59630-59780 bp Feature: domain Description: YkfC Location: 5963 0-59780 bp Feature: domain Description: HNH Note: nucleases Location: 59957-60095 bp Feature: domain Description: HNH Note: nucleases Location: 59957-60095 bp Feature: gene Location: 61424-62440 bp Ori: OFB99875.1 Feature: domain Description: COG3178 Location: 61427-62426 bp Feature: domain Description: COG3 178 Location: 61427-62426 bp Feature: gene Location: 62437-63111 bp Ori: OFB99876.1 Feature: domain Description: NTP_transferase_like_1 Location: 62443-63082 bp Feature: domain Description: NTP_transferase_like_1 Location: 62443 -63 082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LZQI01000030.1 Pseudomonas aeruginosa strain Br993 scaffold36.1, whole genome shotgun sequence (36464 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Ori: OFB97576.1 Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Ori: OFB97578.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 234 -4 705 bp Feature: gene Location: 7566-8537 bp Ori: OFB97591.1 Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 7623-84 03 bp Feature: gene Location: 8541-10412 bp Ori: OFB97579.1 Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)