myRT

myRT report for GCA_001756495.1_ASM175649v1

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Seq: LZQH01000055.1 Pseudomonas aeruginosa strain 1709-12 scaffold9.1, whole genome shotgun sequence (265730 bp)
Overview 1 RT 1: 253496-260465 bp Neighborhood of RT #1 [253496, 260596] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 253496-254407 bp Ori: OFB83184.1 Feature: domain Description: COG4271 Location: 253721-254390 bp Feature: domain Description: COG4271 Location: 253721 -254390 bp Feature: gene Location: 254488-256032 bp Ori: OFB83164.1 Feature: domain Description: CHD Location: 254704-255118 bp Feature: domain Description: CHD Location: 254704-2551 1 8 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: gene Location: 258027-259295 bp Ori: OFB83165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: domain Description: GIIM Note: maturase Location: 258975-259197 bp Feature: domain Description: GIIM Note: maturase Location: 258975-2591 97 bp Feature: gene Location: 259788-259955 bp Feature: gene Location: 260183-260596 bp Ori: OFB83167.1 Feature: domain Description: DUF772 Location: 260333-260465 bp Feature: domain Description: DUF772 Location: 260333-260465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LZQH01000012.1 Pseudomonas aeruginosa strain 1709-12 scaffold2.1, whole genome shotgun sequence (1110163 bp)
Overview 1 RT 1: 658958-667799 bp 2 RT 2: 684063-694398 bp Neighborhood of RT #1 [658958, 667807] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [684063, 694398] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HTH_XRE Feature: gene Location: 658958-659632 bp Ori: OFB91827.1 Feature: domain Description: NTP_transferase_like_1 Location: 658964-659603 bp Feature: domain Description: NTP_transferase_like_1 Location: 658964-659603 bp Feature: gene Location: 659629-660645 bp Ori: OFB91828.1 Feature: domain Description: COG3178 Location: 659632-660631 bp Feature: domain Description: COG3178 Location: 659632 -660631 bp Feature: gene Location: 661918-663630 bp Ori: OFB91829.1 Feature: domain Description: RVT_N Location: 661975-662218 bp Feature: domain Description: RVT_N Location: 661975-662 2 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662263-662899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662 2 63-662 899 bp Feature: domain Description: YkfC Location: 663109-663259 bp Feature: domain Description: YkfC Location: 663109-6632 59 bp Feature: domain Description: HNH Note: nucleases Location: 663436-663574 bp Feature: domain Description: HNH Note: nucleases Location: 663436-663574 bp Feature: gene Location: 663763-666534 bp Ori: OFB91830.1 Feature: domain Description: LptD Location: 663958-666520 bp Feature: domain Description: LptD Location: 663958-66652 0 bp Feature: gene Location: 666515-667807 bp Ori: OFB91831.1 Feature: domain Description: PRK10770 Location: 666605-667799 bp Feature: domain Description: PRK10770 Location: 666605-667799 bp Feature: gene Location: 684063-685916 bp Ori: OFB91849.1 Feature: domain Description: PRK05658 Location: 684075-685914 bp Feature: domain Description: PRK05658 Location: 684075-685914 bp Feature: gene Location: 686023-689760 bp Ori: OFB91850.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 686131-686788 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 686131-686788 bp Feature: domain Description: PRK09776 Location: 687001-687472 bp Feature: domain Description: PRK09776 Location: 687001-687472 bp Feature: domain Description: PAS Location: 687529-688054 bp Feature: domain Description: PAS Location: 68752 9-688054 bp Feature: domain Description: PRK10060 Location: 688066-689710 bp Feature: domain Description: PRK10060 Location: 688066-689710 bp Feature: gene Location: 690841-692526 bp Ori: OFB91851.1 Feature: domain Description: RVT_N Location: 690898-691138 bp Feature: domain Description: RVT_N Location: 690898-691138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691186-691822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691186-69182 2 bp Feature: domain Description: GIIM Note: maturase Location: 691876-692107 bp Feature: domain Description: GIIM Note: maturase Location: 691876-692 107 bp Feature: domain Description: HNH Note: nucleases Location: 692359-692497 bp Feature: domain Description: HNH Note: nucleases Location: 692 359-692 497 bp Feature: gene Location: 693831-694070 bp Ori: OFB91852.1 Feature: domain Description: HTH_XRE Location: 693843-693987 bp Feature: domain Description: HTH_XRE Location: 693843-693987 bp Feature: gene Location: 694168-694398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HTH_XRE (smart00530)

Seq: LZQH01000023.1 Pseudomonas aeruginosa strain 1709-12 scaffold3.1, whole genome shotgun sequence (386056 bp)
Overview 1 RT 1: 380508-383167 bp Neighborhood of RT #1 [380508, 385221] AAA_21 AAA_21 RVT-UG5 Feature: gene Location: 380508-381647 bp Ori: OFB88321.1 Feature: domain Description: AAA_21 Location: 380580-380649 bp Feature: domain Description: AAA_21 Location: 3 80580-3 80649 bp Feature: domain Description: AAA_21 Location: 381123-381453 bp Feature: domain Description: AAA_21 Location: 3 81123 -3 81453 bp Feature: gene Location: 381647-382204 bp Feature: gene Location: 382201-385221 bp Ori: OFB88323.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 382696-383167 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 82696-3 83 167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5