myRT

myRT report for GCA_001756515.1_ASM175651v1

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Seq: LZTN01000003.1 Pseudomonas aeruginosa strain HPA 17 scaffold11.1, whole genome shotgun sequence (260316 bp)
Overview 1 RT 1: 253496-260020 bp Neighborhood of RT #1 [253496, 260316] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 253496-254407 bp Ori: OFC26276.1 Feature: domain Description: COG4271 Location: 253721-254390 bp Feature: domain Description: COG4271 Location: 253721 -254390 bp Feature: gene Location: 254488-256032 bp Ori: OFC26262.1 Feature: domain Description: CHD Location: 254704-255118 bp Feature: domain Description: CHD Location: 254704-2551 1 8 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: gene Location: 258027-259295 bp Ori: OFC26263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: domain Description: GIIM Note: maturase Location: 258975-259197 bp Feature: domain Description: GIIM Note: maturase Location: 258975-2591 97 bp Feature: gene Location: 259684-260316 bp Ori: OFC26264.1 Feature: domain Description: DUF772 Location: 259825-260020 bp Feature: domain Description: DUF772 Location: 259825-260020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LZTN01000034.1 Pseudomonas aeruginosa strain HPA 17 scaffold4.1, whole genome shotgun sequence (471017 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74668-85338 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74668, 85403] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49563-50237 bp Ori: OFC20250.1 Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-502 08 bp Feature: gene Location: 50234-51250 bp Ori: OFC20251.1 Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG3178 Location: 502 37-512 36 bp Feature: gene Location: 52523-54235 bp Ori: OFC20252.1 Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52 580-52 82 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 868-53504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: gene Location: 54368-57139 bp Ori: OFC20253.1 Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54563-5712 5 bp Feature: gene Location: 57120-58412 bp Ori: OFC20254.1 Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK10770 Location: 572 10-58404 bp Feature: gene Location: 74668-76521 bp Ori: OFC20272.1 Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: gene Location: 76628-80365 bp Ori: OFC20273.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: gene Location: 81446-83131 bp Ori: OFC20274.1 Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82 42 7 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: GIIM Note: maturase Location: 82 481-82 712 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83102 bp Feature: domain Description: HNH Note: nucleases Location: 82 964-83102 bp Feature: gene Location: 83854-84975 bp Ori: OFC20275.1 Feature: domain Description: COG3177 Location: 83872-84964 bp Feature: domain Description: COG3177 Location: 83872 -84964 bp Feature: gene Location: 85068-85403 bp Feature: domain Description: NERD Location: 85167-85338 bp Feature: domain Description: NERD Location: 85167-85338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: LZTN01000012.1 Pseudomonas aeruginosa strain HPA 17 scaffold2.1, whole genome shotgun sequence (589425 bp)
Overview 1 RT 1: 26053-34225 bp Neighborhood of RT #1 [26053, 34419] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 26053-27924 bp Ori: OFC22924.1 Feature: domain Description: DUF262 Location: 26101-26869 bp Feature: domain Description: DUF262 Location: 26101-26869 bp Feature: gene Location: 27928-28899 bp Ori: OFC23450.1 Feature: domain Description: YeeA Location: 27985-28765 bp Feature: domain Description: YeeA Location: 27985-28765 bp Feature: gene Location: 29706-32726 bp Ori: OFC22925.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30201-30672 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0201-3 0672 bp Feature: gene Location: 32723-33280 bp Feature: gene Location: 33280-34419 bp Ori: OFC22927.1 Feature: domain Description: AAA_21 Location: 33352-33421 bp Feature: domain Description: AAA_21 Location: 3 3 3 52-3 3 421 bp Feature: domain Description: AAA_21 Location: 33895-34225 bp Feature: domain Description: AAA_21 Location: 3 3 895-3 4225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)