myRT

myRT report for GCA_001756525.1_ASM175652v1

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Seq: LZTM01000062.1 Pseudomonas aeruginosa strain Li010 scaffold65.1, whole genome shotgun sequence (7745 bp)
Overview 1 RT 1: 1111-6791 bp Neighborhood of RT #1 [1111, 6820] IMPa_N_2 IMPa_helical Peptidase_M60 RVT_N RVT-GII GIIM HNH Feature: gene Location: 1111-3837 bp Feature: domain Description: IMPa_N_2 Location: 1318-1900 bp Feature: domain Description: IMPa_N_2 Location: 1 31 8-1 900 bp Feature: domain Description: IMPa_helical Location: 1981-2308 bp Feature: domain Description: IMPa_helical Location: 1 981 -2308 bp Feature: domain Description: Peptidase_M60 Location: 2752-3682 bp Feature: domain Description: Peptidase_M60 Location: 2752-3682 bp Feature: gene Location: 4515-4831 bp Feature: gene Location: 5135-6820 bp Feature: RT Description: RVT_N Location: 5192-5432 bp Feature: RT Description: RVT_N Location: 51 92-5432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5480-6116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5480-61 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 6170-6401 bp Feature: domain Description: GIIM Note: maturase Location: 61 70-6401 bp Feature: domain Description: HNH Note: nucleases Location: 6653-6791 bp Feature: domain Description: HNH Note: nucleases Location: 6653-6791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LZTM01000038.1 Pseudomonas aeruginosa strain Li010 scaffold43.1, whole genome shotgun sequence (57650 bp)
Overview 1 RT 1: 3965-11784 bp Neighborhood of RT #1 [3965, 11801] ABC_phnC DUF772 RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 3965-4792 bp Feature: domain Description: ABC_phnC Location: 3995-4709 bp Feature: domain Description: ABC_phnC Location: 3995-4709 bp Feature: gene Location: 5135-5613 bp Feature: domain Description: DUF772 Location: 5285-5417 bp Feature: domain Description: DUF772 Location: 52 85-5417 bp Feature: gene Location: 6002-7270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6215-6872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 15-6872 bp Feature: domain Description: GIIM Note: maturase Location: 6950-7172 bp Feature: domain Description: GIIM Note: maturase Location: 6950-7172 bp Feature: gene Location: 9265-10809 bp Feature: domain Description: CHD Location: 9481-9895 bp Feature: domain Description: CHD Location: 9481-9895 bp Feature: domain Description: CHD Location: 10123-10612 bp Feature: domain Description: CHD Location: 1012 3-10612 bp Feature: gene Location: 10890-11801 bp Feature: domain Description: COG4271 Location: 11115-11784 bp Feature: domain Description: COG42 71 Location: 11115-11784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: LZTM01000031.1 Pseudomonas aeruginosa strain Li010 scaffold37.1, whole genome shotgun sequence (66268 bp)
Overview 1 RT 1: 34708-43567 bp Neighborhood of RT #1 [34708, 43575] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 34708-35382 bp Feature: domain Description: NTP_transferase_like_1 Location: 34714-35353 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 4714-3 53 53 bp Feature: gene Location: 35379-36395 bp Feature: domain Description: COG3178 Location: 35382-36381 bp Feature: domain Description: COG3 178 Location: 3 53 82-3 63 81 bp Feature: gene Location: 37668-39380 bp Feature: RT Description: RVT_N Location: 37725-37968 bp Feature: RT Description: RVT_N Location: 3 7725-3 7968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38013-38649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8013 -3 8649 bp Feature: domain Description: YkfC Location: 38856-39009 bp Feature: domain Description: YkfC Location: 3 8856-3 9009 bp Feature: domain Description: HNH Note: nucleases Location: 39186-39324 bp Feature: domain Description: HNH Note: nucleases Location: 3 9186-3 93 24 bp Feature: gene Location: 39513-42302 bp Feature: domain Description: LptD Location: 39708-42288 bp Feature: domain Description: LptD Location: 3 9708-42288 bp Feature: gene Location: 42283-43575 bp Feature: domain Description: PRK10770 Location: 42373-43567 bp Feature: domain Description: PRK10770 Location: 423 73 -43 567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: LZTM01000002.1 Pseudomonas aeruginosa strain Li010 scaffold10.1, whole genome shotgun sequence (194908 bp)
Overview 1 RT 1: 11296-17172 bp Neighborhood of RT #1 [11296, 17172] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 11296-11895 bp Feature: domain Description: conj_PilL Location: 11479-11788 bp Feature: domain Description: conj_PilL Location: 114 79-11788 bp Feature: gene Location: 12034-13278 bp Feature: domain Description: KOG0389 Location: 12052-12172 bp Feature: domain Description: KOG0389 Location: 12052-12172 bp Feature: domain Description: SF2_C_SNF Location: 12718-13114 bp Feature: domain Description: SF2_C_SNF Location: 12718-13114 bp Feature: gene Location: 13360-15078 bp Feature: RT Description: RVT_N Location: 13417-13654 bp Feature: RT Description: RVT_N Location: 134 17-13654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13705-14356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13705-14 356 bp Feature: domain Description: GIIM Note: maturase Location: 14410-14641 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 10-14 64 1 bp Feature: domain Description: HNHc Note: nucleases Location: 14875-15031 bp Feature: domain Description: HNHc Note: nucleases Location: 14 875-15031 bp Feature: gene Location: 15696-16730 bp Feature: domain Description: DEXHc_Snf Location: 15915-16173 bp Feature: domain Description: DEXHc_Snf Location: 15915-16173 bp Feature: gene Location: 16867-17172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: LZTM01000034.1 Pseudomonas aeruginosa strain Li010 scaffold4.1, whole genome shotgun sequence (249834 bp)
Overview 1 RT 1: 196758-201156 bp Neighborhood of RT #1 [196758, 201156] SMC_prok_B RVT-DGRs Avd_like Feature: gene Location: 196758-197216 bp Feature: gene Location: 197213-198727 bp Feature: domain Description: SMC_prok_B Location: 197573-198041 bp Feature: domain Description: SMC_prok_B Location: 1975 73-198041 bp Feature: gene Location: 198724-199794 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 198880-199567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 198880-1995 67 bp Feature: gene Location: 200117-200479 bp Feature: domain Description: Avd_like Location: 200144-200456 bp Feature: domain Description: Avd_like Location: 200144-20045 6 bp Feature: gene Location: 200494-201156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT-DGRs, Avd_like (cd16376)

Seq: LZTM01000009.1 Pseudomonas aeruginosa strain Li010 scaffold17.1, whole genome shotgun sequence (148177 bp)
Overview 1 RT 1: 111947-117780 bp Neighborhood of RT #1 [111947, 117785] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 111947-112399 bp Feature: gene Location: 112383-112637 bp Feature: domain Description: SdhE Location: 112389-112629 bp Feature: domain Description: SdhE Location: 112389-1126 29 bp Feature: gene Location: 112728-114434 bp Feature: RT Description: RVT_N Location: 112785-113028 bp Feature: RT Description: RVT_N Location: 112785-113028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113073-113709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113073-113709 bp Feature: domain Description: YkfC Location: 113907-114012 bp Feature: domain Description: YkfC Location: 113907-114012 bp Feature: domain Description: HNHc Note: nucleases Location: 114222-114378 bp Feature: domain Description: HNHc Note: nucleases Location: 114222-114378 bp Feature: gene Location: 115904-116848 bp Feature: domain Description: YgfZ Location: 115913-116813 bp Feature: domain Description: YgfZ Location: 115913-116 813 bp Feature: gene Location: 116949-117785 bp Feature: domain Description: HDOD Location: 116952-117780 bp Feature: domain Description: HDOD Location: 116 952-117780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)